Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027144.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

1852 .. 2307

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027144.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgtttgtttccataccaatggtctttatggcaattcagctacagaaatattacttttccactgcaaaggagttgatgaggatcaatggaacaaccaagtcttttgtagcaaatcatctagcagagtctgtatcaggcgccattacaataagagctttcaatgaagaagagcgcttcttggcaaagaattttcacctcattgacacaaatgctagcccattttttcatagttttgcagcaaatgagtggttgattcaacggttagaaataatttgggcagcagttctcgcctctgcagcactctgtatggttttgcttccaactggaacttttagctctggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

6.82

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	138
AfeI	AGCGCT	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	160, 257
AluBI	AGCT	3 cut(s)	40, 155, 336
AluI	AGCT	3 cut(s)	40, 155, 336
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	236, 278, 296
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	140, 174
AsuHPI	GGTGA	1 cut(s)	185
AsuNHI	GCTAGC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	248, 290, 308
BfaI	CTAG	2 cut(s)	119, 213
BfmI	CTRYAG	2 cut(s)	41, 294
BfoI	RGCGCY	2 cut(s)	141, 175
BisI	GCNGC	3 cut(s)	237, 279, 297
BlsI	GCNGC	3 cut(s)	238, 280, 298
BmiI	GGNNCC	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	248, 290, 308
BshNI	GGYRCC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	214
BstH2I	RGCGCY	2 cut(s)	141, 175
BstHHI	GCGC	2 cut(s)	140, 174
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 296
BstSFI	CTRYAG	2 cut(s)	41, 294
BstV1I	GCAGC	3 cut(s)	248, 290, 308
BstXI	CCANNNNNNTGG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	2 cut(s)	140, 174
CviJI	RGCY	4 cut(s)	40, 155, 216, 336
CviKI_1	RGCY	4 cut(s)	40, 155, 216, 336
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaiI	YATR	4 cut(s)	14, 29, 228, 308
Fnu4HI	GCNGC	3 cut(s)	237, 279, 297
Fsp4HI	GCNGC	3 cut(s)	237, 279, 297
FspBI	CTAG	2 cut(s)	119, 213
GlaI	GCGC	2 cut(s)	139, 173
GluI	GCNGC	3 cut(s)	237, 279, 297
HaeII	RGCGCY	2 cut(s)	141, 175
HhaI	GCGC	2 cut(s)	140, 174
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	2 cut(s)	138, 172
HinP1I	GCGC	2 cut(s)	138, 172
HinfI	GANTC	2 cut(s)	125, 253
HphI	GGTGA	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	65, 236, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 296
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	2 cut(s)	138, 172
KasI	GGCGCC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	81
LguI	GCTCTTC	1 cut(s)	162
LpnPI	CCDG	3 cut(s)	120, 309, 324
Lsp1109I	GCAGC	3 cut(s)	248, 290, 308
MaeI	CTAG	2 cut(s)	119, 213
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	176, 179
MluCI	AATT	3 cut(s)	33, 187, 270
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	3 cut(s)	72, 206, 301
MslI	CAYNNNNRTG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	287, 296
NarI	GGCGCC	1 cut(s)	138
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	238, 280, 298
PleI	GAGTC	1 cut(s)	133
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	162
SatI	GCNGC	3 cut(s)	237, 279, 297
Sau3AI	GATC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	134
SetI	ASST	4 cut(s)	42, 157, 198, 338
SfcI	CTRYAG	2 cut(s)	41, 294
SfoI	GGCGCC	1 cut(s)	139
SgeI	CNNG	7 cut(s)	109, 131, 147, 190, 225, 299, 336
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	3 cut(s)	33, 187, 270
SspDI	GGCGCC	1 cut(s)	137
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	2 cut(s)	119, 213
TaaI	ACNGT	1 cut(s)	261
TasI	AATT	3 cut(s)	33, 187, 270
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	3 cut(s)	236, 278, 296
TspDTI	ATGAA	2 cut(s)	177, 215
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	187
XspI	CTAG	2 cut(s)	119, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.