Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

57940534 .. 57942478

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACATGGTTAGTCCCGGCCCCTTCCAATTCAGTCTCTTCTACTACTCCCACAACTCTCCACCATTTGAAGGAGATTGCTTCGCTCCTTGAGACCGCTGCATACACCAAGGAGGTCCGGCGAGTTGTCCACGCCGTTAGGCTGACGATGGCGAAGAGGCAGAAACTGAGTGTTTCTGTGCCCTTGTTTCTCACTTTTGCCTTTTCGCCGGGATCTGATGCTCACACCAAAGGAGGTGATTTTGCTGATGGTGGTGATTGTGGGGTTCTCTTAAGGTTTCTCGGAGGTCTGGACTCTTCTGACATCGGTGGACTCGGCAGATTGGGCGACTATGGCAGCGTTCATGCATACTGGCACGACTTTTTGCTTGAGGCTTCTGGCACTTTCCTTGTAGTGGAGGGTGGTGGCGGTGAGATGGCTGGCCTTAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI Rpn3_C

Protein Analysis

145

Amino Acids

15.16

Weight (kDa)

6.02

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 408
AclWI	GGATC	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	70, 394
AflII	CTTAAG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	40, 86
AlwI	GGATC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	18, 421
ApeKI	GCWGC	2 cut(s)	98, 336
AspS9I	GGNCC	2 cut(s)	19, 115
AsuC2I	CCSGG	2 cut(s)	17, 210
AsuHPI	GGTGA	3 cut(s)	248, 266, 422
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	85, 348
BccI	CCATC	3 cut(s)	142, 242, 409
BceAI	ACGGC	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	17, 210
BcoDI	GTCTC	2 cut(s)	40, 86
BfrI	CTTAAG	1 cut(s)	271
BisI	GCNGC	2 cut(s)	99, 337
BlsI	GCNGC	2 cut(s)	100, 338
Bme1390I	CCNGG	2 cut(s)	17, 210
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	19, 115
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	17, 210
BmsI	GCATC	1 cut(s)	208
BpuEI	CTTGAG	2 cut(s)	110, 389
BpuMI	CCSGG	2 cut(s)	17, 210
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 394
Bse1I	ACTGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	70, 394
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	85, 348
BshFI	GGCC	2 cut(s)	20, 423
BsiSI	CCGG	3 cut(s)	17, 118, 209
BslI	CCNNNNNNNGG	2 cut(s)	70, 394
BsmAI	GTCTC	2 cut(s)	40, 86
BsnI	GGCC	2 cut(s)	20, 423
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	2 cut(s)	96, 408
BspANI	GGCC	2 cut(s)	20, 423
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	3 cut(s)	43, 149, 301
BstAFI	CTTAAG	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	167, 425
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	2 cut(s)	40, 86
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	324, 333
BstSCI	CCNGG	2 cut(s)	15, 208
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	85, 348
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	20, 423
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	19, 115
CviAII	CATG	2 cut(s)	6, 344
CviJI	RGCY	5 cut(s)	20, 142, 374, 419, 423
CviKI_1	RGCY	5 cut(s)	20, 142, 374, 419, 423
DdeI	CTNAG	2 cut(s)	167, 425
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eam1104I	CTCTTC	3 cut(s)	43, 149, 301
EarI	CTCTTC	3 cut(s)	43, 149, 301
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	9, 347
FaiI	YATR	5 cut(s)	7, 103, 333, 345, 349
FatI	CATG	2 cut(s)	5, 343
Fnu4HI	GCNGC	2 cut(s)	99, 337
Fsp4HI	GCNGC	2 cut(s)	99, 337
GluI	GCNGC	2 cut(s)	99, 337
HaeIII	GGCC	2 cut(s)	20, 423
HapII	CCGG	3 cut(s)	17, 118, 209
Hin1II	CATG	2 cut(s)	9, 347
HinfI	GANTC	2 cut(s)	293, 312
HpaII	CCGG	3 cut(s)	17, 118, 209
HphI	GGTGA	3 cut(s)	248, 266, 422
Hpy166II	GTNNAC	2 cut(s)	130, 311
Hpy188I	TCNGA	3 cut(s)	217, 284, 301
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	2 cut(s)	130, 311
HpyAV	CCTTC	2 cut(s)	33, 64
HpyCH4V	TGCA	2 cut(s)	101, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	324, 333
HpyF3I	CTNAG	2 cut(s)	167, 425
Hsp92II	CATG	2 cut(s)	9, 347
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	7 cut(s)	30, 131, 222, 275, 337, 363, 405
Lsp1109I	GCAGC	2 cut(s)	85, 348
LweI	GCATC	1 cut(s)	208
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	30, 166, 288
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	2 cut(s)	287, 306
MnlI	CCTC	6 cut(s)	106, 150, 227, 278, 364, 391
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	271
MspI	CCGG	3 cut(s)	17, 118, 209
MspR9I	CCNGG	2 cut(s)	17, 210
MwoI	GCNNNNNNNGC	2 cut(s)	324, 333
NciI	CCSGG	2 cut(s)	17, 210
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	9, 347
NlaIV	GGNNCC	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	100, 338
PleI	GAGTC	2 cut(s)	287, 306
PpsI	GAGTC	2 cut(s)	287, 306
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	19, 115
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	2 cut(s)	99, 337
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	19, 115
SchI	GAGTC	2 cut(s)	287, 306
ScrFI	CCNGG	2 cut(s)	17, 210
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	4 cut(s)	117, 238, 278, 289
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	3 cut(s)	89, 271, 368
SmoI	CTYRAG	3 cut(s)	89, 271, 368
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	96, 408
StyD4I	CCNGG	2 cut(s)	15, 208
StyI	CCWWGG	1 cut(s)	108
TasI	AATT	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseI	GCWGC	2 cut(s)	98, 336
TspDTI	ATGAA	1 cut(s)	332
Vha464I	CTTAAG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.