Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

67923541 .. 67924038

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTGCTAATGTTGGTAATCCGAATGTTAGCACATTGCGACTGCTCGTGCCATATCATTCTATGACTCAACATCACTGGGAAGGATACTTAGTCGAGCATGTTTCATCTGATCTGAGCATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGTAGCTACCATGAATGCCTATTGCAATCTTGGAGTGTTGACTGTTGTTACCTGGCAAGTCCTGTTTGTCTTCATACCAATGGTCAGTTGGTCCTGTTTGCCTATTGGAATCTTGGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

4.86

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	112, 127
BspCNI	CTCAG	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	112, 127
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	91, 116
BstKTI	GATC	2 cut(s)	115, 130
BstMBI	GATC	2 cut(s)	112, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	252
CviAII	CATG	2 cut(s)	101, 172
CviJI	RGCY	2 cut(s)	5, 167
CviKI_1	RGCY	2 cut(s)	5, 167
DdeI	CTNAG	2 cut(s)	91, 116
DpnI	GATC	2 cut(s)	114, 129
DpnII	GATC	2 cut(s)	112, 127
Eco47I	GGWCC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	104, 175
FaiI	YATR	6 cut(s)	55, 65, 102, 149, 173, 236
FatI	CATG	2 cut(s)	100, 171
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	104, 175
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	67, 270
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	3 cut(s)	24, 112, 117
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	91, 116
Hsp92II	CATG	2 cut(s)	104, 175
Kzo9I	GATC	2 cut(s)	112, 127
LpnPI	CCDG	5 cut(s)	64, 199, 226, 236, 268
LweI	GCATC	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	114, 129
MboI	GATC	2 cut(s)	112, 127
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	214
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	2 cut(s)	112, 127
NlaIII	CATG	2 cut(s)	104, 175
NspI	RCATGY	1 cut(s)	104
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	112, 127
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	2 cut(s)	169, 215
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	270
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	96, 188, 223
TspRI	CASTG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	252
XceI	RCATGY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.