Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

227619 .. 231989

Gene Structure 4371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgacacagcacccgccctcctcttcctcatcctccgcctccaaccagcacccaactactctccgcctcggcctccgtctcccctctcctccttctctgcctccgtctccgttcacctccttctcctcctccggcacacctcttctctcatctctcttctcaaatccaccaatgatgcagtccatgccggagctccgccttgttccctcgtcgagcccaccatggaagataagacctaacattcaagacaagactcgccgtcgattaaggtttgttgagtggatggattcatccaagaaccagatcttgtatgtcttcttcagttcccctagactccgggacttctgctactatgccaatacgatctttttggttgaccttcttctatatccaaggaatgaaaagtttttcatggtttgtttctcatttgctgtggggccattagcatgggcactaattgtttggcgttgtagcttggtttttagttcacttgacaaattagtcagtgtcctgatacatcttttacctgggttggttttcttcactattcgatggtgggatccagcaacatttgcagccatgcatcctgaaggatcttctgccagagcttcttggccttatctacagaaatattacttttccactgcaaaggagttgatgaggatcaatggaacaaccaagtcttttgtagcaaatcatctagcagagtctgtatcaggcgccattacaataagagctttcaatgaagaagagcgcttcttggcaaagaattttcacctcattgacacaaatgctagcccattttttcatagttttgcagcaaatgagtggttgattcaacggttagaaataatttgcgcagcagttctcgcctctgcagcactctgtatggttttgcttccaactggaacttttagctctgggtttattggaatggtgctttcttatggtctttcattaaacatgtcgttgatctattcaattcaaaaccgactcaaaacatggatgaatattttctgggatgatggggttggatgccaaactgaaaattcttactgcagcaaatctgatataaagagcataaaggtgaggctaggggcgattaagaagaagaggaaagctgtgctgaagtatctgaagaataatgttgctgttcttctcaagattggccttgatattaatgtatatggggggttaagtttcatggctcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

404

Amino Acids

45.54

Weight (kDa)

9.72

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
Acc16I	TGCGCA	1 cut(s)	859
AccB1I	GGYRCC	1 cut(s)	719
AciI	CCGC	4 cut(s)	14, 36, 64, 196
AclWI	GGATC	4 cut(s)	554, 567, 601, 671
AcsI	RAATTY	2 cut(s)	769, 1048
AcuI	CTGAAG	4 cut(s)	304, 609, 1148, 1157
AcyI	GRCGYC	1 cut(s)	720
AfeI	AGCGCT	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	963
AgsI	TTSAA	5 cut(s)	245, 742, 839, 981, 986
AhdI	GACNNNNNGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	6 cut(s)	193, 474, 608, 737, 918, 1121
AluI	AGCT	6 cut(s)	193, 474, 608, 737, 918, 1121
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	83, 111
AlwI	GGATC	4 cut(s)	554, 567, 601, 671
AlwNI	CAGNNNCTG	1 cut(s)	710
Aor51HI	AGCGCT	1 cut(s)	755
AoxI	GGCC	4 cut(s)	70, 437, 614, 1168
ApeKI	GCWGC	5 cut(s)	575, 818, 860, 878, 1059
ApoI	RAATTY	2 cut(s)	769, 1048
AseI	ATTAAT	1 cut(s)	1179
Asp700I	GAANNNNTTC	1 cut(s)	1013
AspLEI	GCGC	3 cut(s)	722, 756, 860
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	3 cut(s)	106, 767, 1099
AsuNHI	GCTAGC	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	2 cut(s)	195, 218
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	587, 830, 872, 890, 1071
BccI	CCATC	3 cut(s)	277, 546, 1019
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	83, 111
BfaI	CTAG	4 cut(s)	330, 701, 795, 1094
BfmI	CTRYAG	3 cut(s)	623, 876, 1057
BfoI	RGCGCY	2 cut(s)	723, 757
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	5 cut(s)	576, 819, 861, 879, 1060
BlsI	GCNGC	5 cut(s)	577, 820, 862, 880, 1061
Bme1390I	CCNGG	2 cut(s)	338, 528
BmeRI	GACNNNNNGTC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	438, 561, 721
BmrFI	CCNGG	2 cut(s)	338, 528
BmsI	GCATC	3 cut(s)	165, 592, 1025
BmtI	GCTAGC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	1145
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	720
BsaJI	CCNNGG	4 cut(s)	67, 221, 392, 527
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	910
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	67, 221, 392, 527
BseGI	GGATG	7 cut(s)	29, 288, 290, 583, 1011, 1027, 1040
BseJI	GATNNNNATC	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	910
BseRI	GAGGAG	4 cut(s)	10, 78, 115, 118
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	587, 830, 872, 890, 1071
BshFI	GGCC	4 cut(s)	72, 439, 616, 1170
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	132, 188, 337
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	83, 111
BsmBI	CGTCTC	2 cut(s)	83, 111
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	4 cut(s)	72, 439, 616, 1170
Bsp1286I	GDGCHC	3 cut(s)	195, 218, 454
Bsp143I	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	4 cut(s)	14, 36, 64, 196
BspANI	GGCC	4 cut(s)	72, 439, 616, 1170
BspLI	GGNNCC	3 cut(s)	438, 561, 721
BspMAI	CTGCAG	2 cut(s)	880, 1061
BspOI	GCTAGC	1 cut(s)	798
BspPI	GGATC	4 cut(s)	554, 567, 601, 671
BspQI	GCTCTTC	1 cut(s)	744
BspT107I	GGYRCC	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	910
BssECI	CCNNGG	4 cut(s)	67, 221, 392, 527
BssMI	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
BssNI	GRCGYC	1 cut(s)	720
BssT1I	CCWWGG	2 cut(s)	221, 392
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	843
Bst6I	CTCTTC	5 cut(s)	28, 147, 161, 744, 1106
BstACI	GRCGYC	1 cut(s)	720
BstAPI	GCANNNNNTGC	2 cut(s)	184, 572
BstC8I	GCNNGC	1 cut(s)	796
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	7 cut(s)	29, 288, 290, 583, 1011, 1027, 1040
BstH2I	RGCGCY	2 cut(s)	723, 757
BstHHI	GCGC	3 cut(s)	722, 756, 860
BstKTI	GATC	6 cut(s)	306, 366, 562, 596, 666, 975
BstMAI	GTCTC	2 cut(s)	83, 111
BstMBI	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 572, 869, 878
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	2 cut(s)	336, 526
BstSFI	CTRYAG	3 cut(s)	623, 876, 1057
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	5 cut(s)	587, 830, 872, 890, 1071
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	3 cut(s)	303, 559, 593
BstXI	CCANNNNNNTGG	1 cut(s)	447
BstYI	RGATCY	3 cut(s)	303, 559, 593
BsuRI	GGCC	4 cut(s)	72, 439, 616, 1170
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	7 cut(s)	29, 288, 290, 583, 1011, 1027, 1040
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	511, 642
Cac8I	GCNNGC	1 cut(s)	796
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	3 cut(s)	722, 756, 860
Cfr13I	GGNCC	1 cut(s)	437
CviAII	CATG	8 cut(s)	184, 222, 412, 447, 580, 964, 1002, 1204
DinI	GGCGCC	1 cut(s)	721
DpnI	GATC	6 cut(s)	305, 365, 561, 595, 665, 974
DpnII	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
DrdI	GACNNNNNNGTC	1 cut(s)	500
DriI	GACNNNNNGTC	1 cut(s)	258
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	5 cut(s)	28, 147, 161, 744, 1106
Eam1105I	GACNNNNNGTC	1 cut(s)	258
EarI	CTCTTC	5 cut(s)	28, 147, 161, 744, 1106
EciI	GGCGGA	3 cut(s)	25, 53, 185
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	221, 392
Eco24I	GRGCYC	2 cut(s)	195, 218
Eco47III	AGCGCT	1 cut(s)	755
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	4 cut(s)	304, 609, 1148, 1157
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	221, 392
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	2 cut(s)	195, 218
EgeI	GGCGCC	1 cut(s)	721
EheI	GGCGCC	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	221, 392
Esp3I	CGTCTC	2 cut(s)	83, 111
FaeI	CATG	8 cut(s)	187, 225, 415, 450, 583, 967, 1005, 1207
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	8 cut(s)	183, 221, 411, 446, 579, 963, 1001, 1203
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	5 cut(s)	576, 819, 861, 879, 1060
FokI	GGATG	7 cut(s)	16, 277, 295, 570, 1018, 1034, 1047
FriOI	GRGCYC	2 cut(s)	195, 218
Fsp4HI	GCNGC	5 cut(s)	576, 819, 861, 879, 1060
FspBI	CTAG	4 cut(s)	330, 701, 795, 1094
FspI	TGCGCA	1 cut(s)	859
GlaI	GCGC	3 cut(s)	721, 755, 859
GluI	GCNGC	5 cut(s)	576, 819, 861, 879, 1060
HaeII	RGCGCY	2 cut(s)	723, 757
HaeIII	GGCC	4 cut(s)	72, 439, 616, 1170
HapII	CCGG	3 cut(s)	132, 188, 337
HhaI	GCGC	3 cut(s)	722, 756, 860
Hin1I	GRCGYC	1 cut(s)	720
Hin1II	CATG	8 cut(s)	187, 225, 415, 450, 583, 967, 1005, 1207
Hin6I	GCGC	3 cut(s)	720, 754, 858
HinP1I	GCGC	3 cut(s)	720, 754, 858
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	6 cut(s)	253, 287, 333, 707, 835, 993
HpaII	CCGG	3 cut(s)	132, 188, 337
HphI	GGTGA	3 cut(s)	106, 767, 1099
Hpy166II	GTNNAC	3 cut(s)	114, 376, 488
Hpy188I	TCNGA	2 cut(s)	1069, 1137
Hpy188III	TCNNGA	4 cut(s)	245, 511, 587, 1162
Hpy8I	GTNNAC	3 cut(s)	114, 376, 488
Hpy99I	CGWCG	2 cut(s)	214, 264
HpyAV	CCTTC	4 cut(s)	102, 130, 389, 584
HpyCH4III	ACNGT	1 cut(s)	843
HpyCH4V	TGCA	7 cut(s)	178, 575, 583, 647, 818, 878, 1059
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 572, 869, 878
Hsp92I	GRCGYC	1 cut(s)	720
Hsp92II	CATG	8 cut(s)	187, 225, 415, 450, 583, 967, 1005, 1207
HspAI	GCGC	3 cut(s)	720, 754, 858
KasI	GGCGCC	1 cut(s)	719
Kzo9I	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	2 cut(s)	190, 198
Lsp1109I	GCAGC	5 cut(s)	587, 830, 872, 890, 1071
LweI	GCATC	3 cut(s)	165, 592, 1025
MaeI	CTAG	4 cut(s)	330, 701, 795, 1094
MalI	GATC	6 cut(s)	305, 365, 561, 595, 665, 974
MboI	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
MflI	RGATCY	3 cut(s)	303, 559, 593
MhlI	GDGCHC	3 cut(s)	195, 218, 454
MluCI	AATT	6 cut(s)	456, 497, 769, 852, 981, 1048
Mly113I	GGCGCC	1 cut(s)	720
MlyI	GAGTC	4 cut(s)	247, 327, 716, 987
MmeI	TCCRAC	3 cut(s)	66, 926, 1012
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	1013
MseI	TTAA	5 cut(s)	266, 959, 1104, 1179, 1196
MslI	CAYNNNNRTG	2 cut(s)	445, 1085
MspI	CCGG	3 cut(s)	132, 188, 337
MspR9I	CCNGG	2 cut(s)	338, 528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	184, 572, 869, 878
NarI	GGCGCC	1 cut(s)	720
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
NheI	GCTAGC	1 cut(s)	794
NlaIII	CATG	8 cut(s)	187, 225, 415, 450, 583, 967, 1005, 1207
NlaIV	GGNNCC	3 cut(s)	438, 561, 721
NmeAIII	GCCGAG	1 cut(s)	48
NsbI	TGCGCA	1 cut(s)	859
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	1 cut(s)	967
PciI	ACATGT	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	1013
PfeI	GAWTC	2 cut(s)	287, 835
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	5 cut(s)	577, 820, 862, 880, 1061
PleI	GAGTC	4 cut(s)	247, 327, 715, 987
PluTI	GGCGCC	1 cut(s)	723
PpsI	GAGTC	4 cut(s)	247, 327, 715, 987
PscI	ACATGT	1 cut(s)	963
PshBI	ATTAAT	1 cut(s)	1179
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	438, 561, 721
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	2 cut(s)	880, 1061
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	3 cut(s)	303, 559, 593
RseI	CAYNNNNRTG	2 cut(s)	445, 1085
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	5 cut(s)	266, 959, 1104, 1179, 1196
SatI	GCNGC	5 cut(s)	576, 819, 861, 879, 1060
Sau3AI	GATC	6 cut(s)	303, 363, 559, 593, 663, 972
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	4 cut(s)	247, 327, 716, 987
ScrFI	CCNGG	2 cut(s)	338, 528
SduI	GDGCHC	3 cut(s)	195, 218, 454
SfaNI	GCATC	3 cut(s)	165, 592, 1025
SfcI	CTRYAG	3 cut(s)	623, 876, 1057
SfoI	GGCGCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	2 cut(s)	445, 1085
SmlI	CTYRAG	1 cut(s)	1160
SmoI	CTYRAG	1 cut(s)	1160
Sse9I	AATT	6 cut(s)	456, 497, 769, 852, 981, 1048
SsiI	CCGC	4 cut(s)	14, 36, 64, 196
SspDI	GGCGCC	1 cut(s)	719
SspI	AATATT	2 cut(s)	632, 1012
SspMI	CTAG	4 cut(s)	330, 701, 795, 1094
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	336, 526
StyI	CCWWGG	2 cut(s)	221, 392
TaaI	ACNGT	1 cut(s)	843
TaqI	TCGA	3 cut(s)	212, 262, 550
TasI	AATT	6 cut(s)	456, 497, 769, 852, 981, 1048
TfiI	GAWTC	2 cut(s)	287, 835
Tru1I	TTAA	5 cut(s)	266, 959, 1104, 1179, 1196
Tru9I	TTAA	5 cut(s)	266, 959, 1104, 1179, 1196
TscAI	CASTG	2 cut(s)	511, 649
TseI	GCWGC	5 cut(s)	575, 818, 860, 878, 1059
TspDTI	ATGAA	8 cut(s)	279, 400, 414, 759, 797, 945, 1022, 1192
TspGWI	ACGGA	3 cut(s)	65, 93, 99
TspRI	CASTG	2 cut(s)	511, 649
VspI	ATTAAT	1 cut(s)	1179
XapI	RAATTY	2 cut(s)	769, 1048
XceI	RCATGY	1 cut(s)	967
XmnI	GAANNNNTTC	1 cut(s)	1013
XspI	CTAG	4 cut(s)	330, 701, 795, 1094
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.