Rmu_co8205360.1_g000001

ABC transporter C family member 10-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8205360.1
Physical Location & Seq
Reverse (-)
1 .. 622
622 bp
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UTR
Exon/CDS
Intron
Rmu_co8205360.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
atgcgaatgaatggcacgactaaatctgcccttgcaagccacctttcggaatctattgctggagcagtgacaatcagagcttttggagaggaggcgagattcttctccaaaaactttgaattcattgatgcaaattctagcgctgacttcaatagcttttcaacaaacgagtggttgattgaacgtctagaattgctatgcgctattgtgctctcagcctcagcacttgccattacttggattcagtctggtgcttcttcctctggatttattgggatgacactatcatatggcctttcactaaatgtattcctagtaatttttgtacaatttcagtgcatgctagcaaattcaatcatttctgtagaaagggtagaacaatacatgcacattcctagcgaagccgccgaagtaattgaagacaaccgacctgcacacaattggcctattgttggtaaagtggaaatacatggcttagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.58

Weight (kDa)

4.92

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 237
AciI CCGC 1 cut(s) 405
AcsI RAATTY 3 cut(s) 119, 133, 349
AfaI GTAC 1 cut(s) 327
AfeI AGCGCT 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 46, 237, 452
AgsI TTSAA 6 cut(s) 119, 151, 162, 182, 354, 419
AluBI AGCT 2 cut(s) 80, 156
AluI AGCT 2 cut(s) 80, 156
Alw21I GWGCWC 1 cut(s) 213
Aor51HI AGCGCT 1 cut(s) 142
AoxI GGCC 2 cut(s) 292, 443
ApoI RAATTY 3 cut(s) 119, 133, 349
AspLEI GCGC 2 cut(s) 143, 203
AsuNHI GCTAGC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 220
BfaI CTAG 5 cut(s) 138, 188, 314, 344, 396
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmsI GCATC 1 cut(s) 118
BmtI GCTAGC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 220
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 237, 452
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 46, 237, 452
BseMII CTCAG 2 cut(s) 228, 234
BseRI GAGGAG 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 2 cut(s) 294, 445
BsiHKAI GWGCWC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 46, 237, 452
BsnI GGCC 2 cut(s) 294, 445
Bsp1286I GDGCHC 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 325
BspACI CCGC 1 cut(s) 405
BspANI GGCC 2 cut(s) 294, 445
BspCNI CTCAG 2 cut(s) 227, 233
BspMI ACCTGC 1 cut(s) 439
BspOI GCTAGC 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 325
BstAUI TGTACA 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 37, 341, 345
BstDEI CTNAG 3 cut(s) 214, 220, 475
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 203
BstNSI RCATGY 2 cut(s) 343, 388
BstSFI CTRYAG 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 294, 445
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 341
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 37, 341, 345
CfoI GCGC 2 cut(s) 143, 203
Csp6I GTAC 1 cut(s) 326
CviAII CATG 3 cut(s) 340, 385, 470
CviJI RGCY 8 cut(s) 39, 80, 156, 218, 294, 404, 445, 474
CviKI_1 RGCY 8 cut(s) 39, 80, 156, 218, 294, 404, 445, 474
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 3 cut(s) 214, 220, 475
Eco47III AGCGCT 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 119
FaeI CATG 3 cut(s) 343, 388, 473
FaiI YATR 6 cut(s) 199, 289, 291, 341, 386, 471
FatI CATG 3 cut(s) 339, 384, 469
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 5 cut(s) 138, 188, 314, 344, 396
GlaI GCGC 2 cut(s) 142, 202
GluI GCNGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 294, 445
HhaI GCGC 2 cut(s) 143, 203
Hin1II CATG 3 cut(s) 343, 388, 473
Hin6I GCGC 2 cut(s) 141, 201
HinP1I GCGC 2 cut(s) 141, 201
HinfI GANTC 3 cut(s) 50, 99, 241
Hpy188I TCNGA 2 cut(s) 49, 77
Hpy188III TCNNGA 2 cut(s) 188, 264
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 5 cut(s) 35, 131, 339, 388, 434
HpyF3I CTNAG 3 cut(s) 214, 220, 475
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 343, 388, 473
HspAI GCGC 2 cut(s) 141, 201
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 4 cut(s) 45, 234, 249, 444
LweI GCATC 1 cut(s) 118
MaeI CTAG 5 cut(s) 138, 188, 314, 344, 396
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 3 cut(s) 94, 249, 431
MfeI CAATTG 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 8 cut(s) 119, 133, 191, 318, 329, 349, 414, 439
MnlI CCTC 4 cut(s) 82, 85, 229, 271
MunI CAATTG 1 cut(s) 439
NdeI CATATG 1 cut(s) 289
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 3 cut(s) 343, 388, 473
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 2 cut(s) 343, 388
PaeI GCATGC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 50, 99, 241
PflMI CCANNNNNTGG 1 cut(s) 237
PkrI GCNGC 1 cut(s) 406
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SatI GCNGC 1 cut(s) 405
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 45, 82, 158, 187, 433
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 363
SphI GCATGC 1 cut(s) 343
Sse9I AATT 8 cut(s) 119, 133, 191, 318, 329, 349, 414, 439
SsiI CCGC 1 cut(s) 405
SspMI CTAG 5 cut(s) 138, 188, 314, 344, 396
TaiI ACGT 1 cut(s) 187
TasI AATT 8 cut(s) 119, 133, 191, 318, 329, 349, 414, 439
TatI WGTACW 1 cut(s) 325
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 3 cut(s) 50, 99, 241
TscAI CASTG 2 cut(s) 72, 341
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 23, 112
TspRI CASTG 2 cut(s) 72, 341
Van91I CCANNNNNTGG 1 cut(s) 237
XapI RAATTY 3 cut(s) 119, 133, 349
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 343, 388
XspI CTAG 5 cut(s) 138, 188, 314, 344, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.