Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

67171176 .. 67174187

Gene Structure 3012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG481600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCTGTTGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCCCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAAACTCTCTATTTTGTGCACCCATGTCTTTCTATGACTCAGCGCCTCTAGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTAGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTAGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCTACTGCAAAGGAGCTGATCAGGATCAATAGAACAACTAAGTCTTTTAATAACAACATTATGTTGGAGAAGAAGGCAGATGTAAAGGTGATACTGCTTTCAGAAGAACATAAGAGAGAAAAGAATGAATTGTTTAGAACAATTATTGAATTGGAAAAGCAACTTGACGTCAAAACTGCATTGGCGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTGAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATCGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGATTATACTAGGGACAAAAGCTGGCACCCATTCAAAGTTATTGTGGATAAAGTAGGAAATGCAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

333

Amino Acids

38.05

Weight (kDa)

6.48

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	11 - 158	3.7e-16	ABC transporter transmembrane region
XH	PF03469	280 - 325	1e-06	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	954
AclWI	GGATC	2 cut(s)	93, 434
AcsI	RAATTY	2 cut(s)	759, 877
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	551, 886, 902, 964
AjnI	CCWGG	1 cut(s)	810
AluBI	AGCT	8 cut(s)	33, 154, 290, 326, 385, 418, 770, 951
AluI	AGCT	8 cut(s)	33, 154, 290, 326, 385, 418, 770, 951
Alw21I	GWGCWC	1 cut(s)	178
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	93, 434
AoxI	GGCC	1 cut(s)	927
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	5, 326
ApoI	RAATTY	2 cut(s)	759, 877
AspLEI	GCGC	2 cut(s)	202, 589
AspS9I	GGNCC	1 cut(s)	927
AsuHPI	GGTGA	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	638
BciT130I	CCWGG	1 cut(s)	812
BciVI	GTATCC	1 cut(s)	207
BclI	TGATCA	2 cut(s)	420, 783
BfaI	CTAG	5 cut(s)	206, 272, 323, 590, 939
BfmI	CTRYAG	1 cut(s)	386
BfoI	RGCGCY	2 cut(s)	203, 590
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	2 cut(s)	6, 327
BlsI	GCNGC	2 cut(s)	7, 328
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	927
BmiI	GGNNCC	1 cut(s)	956
BmrFI	CCNGG	1 cut(s)	812
BmsI	GCATC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	1 cut(s)	717
BseJI	GATNNNNATC	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	164, 210, 785
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	929
BshNI	GGYRCC	1 cut(s)	954
BsiHKAI	GWGCWC	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	956
BsnI	GGCC	1 cut(s)	929
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
Bsp19I	CCATGG	1 cut(s)	717
BspANI	GGCC	1 cut(s)	929
BspCNI	CTCAG	3 cut(s)	163, 209, 784
BspLI	GGNNCC	1 cut(s)	956
BspPI	GGATC	2 cut(s)	93, 434
BspT107I	GGYRCC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
BssNI	GRCGYC	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	3 cut(s)	112, 690, 795
Bst6I	CTCTTC	2 cut(s)	699, 824
BstACI	GRCGYC	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	953
BstDEI	CTNAG	7 cut(s)	150, 196, 218, 239, 314, 441, 771
BstDSI	CCRYGG	1 cut(s)	717
BstH2I	RGCGCY	2 cut(s)	203, 590
BstHHI	GCGC	2 cut(s)	202, 589
BstKTI	GATC	7 cut(s)	48, 101, 238, 253, 423, 429, 786
BstMBI	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	812
BstSCI	CCNGG	1 cut(s)	810
BstSFI	CTRYAG	1 cut(s)	386
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	98, 250
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	2 cut(s)	98, 250
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	929
BtgI	CCRYGG	1 cut(s)	717
Cac8I	GCNNGC	1 cut(s)	953
CfoI	GCGC	2 cut(s)	202, 589
Cfr13I	GGNCC	1 cut(s)	927
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	5 cut(s)	181, 336, 638, 718, 824
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	7 cut(s)	150, 196, 218, 239, 314, 441, 771
DpnI	GATC	7 cut(s)	47, 100, 237, 252, 422, 428, 785
DpnII	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
Eam1104I	CTCTTC	2 cut(s)	699, 824
EarI	CTCTTC	2 cut(s)	699, 824
Eco130I	CCWWGG	1 cut(s)	717
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	717
EcoT22I	ATGCAT	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	5 cut(s)	184, 339, 641, 721, 827
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	1 cut(s)	956
FatI	CATG	5 cut(s)	180, 335, 637, 717, 823
FbaI	TGATCA	2 cut(s)	420, 783
Fnu4HI	GCNGC	2 cut(s)	6, 327
Fsp4HI	GCNGC	2 cut(s)	6, 327
FspBI	CTAG	5 cut(s)	206, 272, 323, 590, 939
GlaI	GCGC	2 cut(s)	201, 588
GluI	GCNGC	2 cut(s)	6, 327
HaeII	RGCGCY	2 cut(s)	203, 590
HaeIII	GGCC	1 cut(s)	929
HhaI	GCGC	2 cut(s)	202, 589
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	5 cut(s)	184, 339, 641, 721, 827
Hin6I	GCGC	2 cut(s)	200, 587
HinP1I	GCGC	2 cut(s)	200, 587
HincII	GTYRAC	2 cut(s)	108, 844
HindII	GTYRAC	2 cut(s)	108, 844
HinfI	GANTC	2 cut(s)	194, 800
HpaI	GTTAAC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	4 cut(s)	55, 108, 176, 844
Hpy188I	TCNGA	6 cut(s)	98, 235, 505, 774, 861, 1001
Hpy188III	TCNNGA	4 cut(s)	125, 254, 424, 764
Hpy8I	GTNNAC	4 cut(s)	55, 108, 176, 844
HpyAV	CCTTC	4 cut(s)	204, 469, 694, 769
HpyCH4III	ACNGT	3 cut(s)	112, 690, 795
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	9 cut(s)	40, 77, 176, 410, 581, 637, 655, 866, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	7 cut(s)	150, 196, 218, 239, 314, 441, 771
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	5 cut(s)	184, 339, 641, 721, 827
HspAI	GCGC	2 cut(s)	200, 587
Ksp22I	TGATCA	2 cut(s)	420, 783
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
LmnI	GCTCC	2 cut(s)	287, 415
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	5 cut(s)	206, 272, 323, 590, 939
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	7 cut(s)	47, 100, 237, 252, 422, 428, 785
MboI	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
MboII	GAAGA	6 cut(s)	484, 518, 653, 709, 716, 841
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	2 cut(s)	98, 250
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	8 cut(s)	41, 378, 530, 543, 551, 759, 877, 902
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	447, 888
MnlI	CCTC	5 cut(s)	121, 213, 602, 676, 700
Mph1103I	ATGCAT	1 cut(s)	639
MseI	TTAA	4 cut(s)	107, 450, 623, 692
MslI	CAYNNNNRTG	2 cut(s)	362, 642
MspR9I	CCNGG	1 cut(s)	812
MunI	CAATTG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
NlaIII	CATG	5 cut(s)	184, 339, 641, 721, 827
NlaIV	GGNNCC	1 cut(s)	956
NsiI	ATGCAT	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	800
PkrI	GCNGC	2 cut(s)	7, 328
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	956
PspPI	GGNCC	1 cut(s)	927
PsuI	RGATCY	2 cut(s)	98, 250
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	362, 642
SaqAI	TTAA	4 cut(s)	107, 450, 623, 692
SatI	GCNGC	2 cut(s)	6, 327
Sau3AI	GATC	7 cut(s)	45, 98, 235, 250, 420, 426, 783
Sau96I	GGNCC	1 cut(s)	927
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	812
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	362, 642
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	8 cut(s)	41, 378, 530, 543, 551, 759, 877, 902
SspI	AATATT	2 cut(s)	395, 898
SspMI	CTAG	5 cut(s)	206, 272, 323, 590, 939
StyD4I	CCNGG	1 cut(s)	810
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	3 cut(s)	112, 690, 795
TaiI	ACGT	1 cut(s)	573
TasI	AATT	8 cut(s)	41, 378, 530, 543, 551, 759, 877, 902
TatI	WGTACW	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	4 cut(s)	107, 450, 623, 692
Tru9I	TTAA	4 cut(s)	107, 450, 623, 692
TseI	GCWGC	2 cut(s)	5, 326
TspDTI	ATGAA	7 cut(s)	219, 543, 654, 686, 771, 792, 812
VneI	GTGCAC	1 cut(s)	174
XapI	RAATTY	2 cut(s)	759, 877
XspI	CTAG	5 cut(s)	206, 272, 323, 590, 939
ZraI	GACGTC	1 cut(s)	571
ZrmI	AGTACT	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.