Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

67539555 .. 67540129

Gene Structure 575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60592

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTGGTAATCCGAATGTTAGCACATTGCGACTGCTCATCTCTTGCAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCTTTGTTTTCACAATTACTAAACTCCCTTTTTTGTGCAGCCATATCATTCTATGACTCAACATCACTGGGAAGGATACTTAGTCGAGTTTCATCTGATCTGAACATCACAGATCTTGATATCCCATTCAGCATAGTATTTGCTTGTGTAGCTACCATGAATGCCTATTGCAATCTTGGCGTGTTGACTGTTGTTACCTGGCAAGTCCTGTTTGTCTCCATACCAATGGTCTGTGTCGCAATTCAGCTAGATGAATTTGGCACCACAAATGTCATTTTGGATCTTTATGGCTTTTGTTATAGACCACCAGCACCAGCAGGCACCTTATTAGCGAATCGCATAAAATACAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

144

Amino Acids

15.68

Weight (kDa)

5.03

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	20 - 104	2.3e-07	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AccB1I	GGYRCC	2 cut(s)	338, 398
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	230, 325
AluI	AGCT	2 cut(s)	230, 325
Alw26I	GTCTC	2 cut(s)	62, 298
AlwI	GGATC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	47, 116
ApoI	RAATTY	1 cut(s)	332
BanI	GGYRCC	2 cut(s)	338, 398
BbvI	GCAGC	2 cut(s)	59, 128
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	62, 298
BfaI	CTAG	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	2 cut(s)	48, 117
BlsI	GCNGC	2 cut(s)	49, 118
Bme1390I	CCNGG	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	340, 400
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	59, 128
BsgI	GTGCAG	1 cut(s)	135
BshNI	GGYRCC	2 cut(s)	338, 398
BsmAI	GTCTC	2 cut(s)	62, 298
BsmI	GAATGC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	175, 190, 358
BspLI	GGNNCC	2 cut(s)	340, 400
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	2 cut(s)	338, 398
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	175, 190, 358
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	178, 193, 361
BstMAI	GTCTC	2 cut(s)	62, 298
BstMBI	GATC	3 cut(s)	175, 190, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 255
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	59, 128
BstX2I	RGATCY	2 cut(s)	190, 358
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	2 cut(s)	190, 358
BsuI	GTATCC	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	397
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	4 cut(s)	119, 230, 325, 369
CviKI_1	RGCY	4 cut(s)	119, 230, 325, 369
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	3 cut(s)	177, 192, 360
DpnII	GATC	3 cut(s)	175, 190, 358
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	1 cut(s)	238
FaiI	YATR	8 cut(s)	122, 132, 212, 236, 299, 366, 378, 419
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	48, 117
Fsp4HI	GCNGC	2 cut(s)	48, 117
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	2 cut(s)	48, 117
Hin1II	CATG	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	2 cut(s)	134, 412
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	3 cut(s)	14, 175, 180
Hpy188III	TCNNGA	2 cut(s)	65, 194
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	47, 116, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 255
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	175, 190, 358
LpnPI	CCDG	7 cut(s)	131, 262, 289, 299, 381, 399, 405
Lsp1109I	GCAGC	2 cut(s)	59, 128
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	177, 192, 360
MboI	GATC	3 cut(s)	175, 190, 358
MflI	RGATCY	2 cut(s)	190, 358
MluCI	AATT	4 cut(s)	92, 318, 332, 427
MlyI	GAGTC	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	227, 255
NdeII	GATC	3 cut(s)	175, 190, 358
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	340, 400
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	49, 118
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	340, 400
PsuI	RGATCY	2 cut(s)	190, 358
RseI	CAYNNNNRTG	1 cut(s)	302
SatI	GCNGC	2 cut(s)	48, 117
Sau3AI	GATC	3 cut(s)	175, 190, 358
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	4 cut(s)	232, 278, 327, 404
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	92, 318, 332, 427
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	92, 318, 332, 427
TfiI	GAWTC	1 cut(s)	412
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	2 cut(s)	47, 116
TspDTI	ATGAA	3 cut(s)	159, 251, 345
TspRI	CASTG	1 cut(s)	150
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.