Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007472.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

81784 .. 83681

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007472.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggtttgtttctcatttgctgaggggccattagcatgggcactgattgtttggcgttgtagcttggtttttagttcacttgacaaattagtcagtgtcctgatacatcttttacctgggttggttttcttcactattcgatggtgggatccagcaacatttgcagccatgcatcctgaaggatcttctgccagagcttcttggccttatgtagaaagcaaaacttatctgtggacatggttgtttgtggtgcccctggtcgcatactccctatggcagcttttgtattttctcattgtcaacgttttacgccgacaaaggctgttaagggatcctgaagtgatcacttctttcaggtccaatctctcaccatcctcattccctgcgttttggttcatgtcctttctttcacccttatctgattatttcattcttgacagagaactctcgaagaaggcgcaaaaagcaaacaatttgtggtggcacttaagcttgttttcttggggatcaaaattgattgtttatgtacattgttcaaatagtcagatagcacagaactcttggatggctgctaatgttgataatcccaatgttagctcatcacaattgatcttggtctacctgtcgattggattttctgcaacatttattttactattcagatctctgttaacagttggtttgggtcttgaggcatcaagggctttattttctcagctactaaactctctatttcatgcacccatgtctttctatgactcaacgcctttgggaaggatactaagtcggaaatattacttttccattgcaaaggagttgatgaggatcaatggaacaaccaagtcttttgtagcaaatcatctagcagagtctgtatcaggcgccattacaataagagctttcaatgaagaagagcgcttcttggcaaagaattttcacctcattgacataaatgctagcccattttttcatagttttgcagcaaatgagtggttaaatcaacggttagaaataatttgcgcagcagttctcacctctgcagcactctgtatggttttgcttccaactggaacttttagctctggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

362

Amino Acids

41.08

Weight (kDa)

9.1

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc16I	TGCGCA	1 cut(s)	1021
AccB1I	GGYRCC	2 cut(s)	250, 881
AccI	GTMKAC	1 cut(s)	618
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	7 cut(s)	143, 156, 190, 326, 339, 514, 833
AcsI	RAATTY	1 cut(s)	931
AcuI	CTGAAG	2 cut(s)	198, 357
AcyI	GRCGYC	1 cut(s)	882
AfaI	GTAC	1 cut(s)	528
AfeI	AGCGCT	1 cut(s)	917
AflII	CTTAAG	1 cut(s)	487
AgsI	TTSAA	2 cut(s)	537, 904
AjnI	CCWGG	2 cut(s)	115, 255
AluBI	AGCT	8 cut(s)	63, 197, 280, 492, 597, 718, 899, 1080
AluI	AGCT	8 cut(s)	63, 197, 280, 492, 597, 718, 899, 1080
AlwI	GGATC	7 cut(s)	143, 156, 190, 326, 339, 514, 833
AlwNI	CAGNNNCTG	1 cut(s)	872
Aor51HI	AGCGCT	1 cut(s)	917
AoxI	GGCC	2 cut(s)	26, 203
ApeKI	GCWGC	6 cut(s)	164, 277, 569, 980, 1022, 1040
ApoI	RAATTY	1 cut(s)	931
AspLEI	GCGC	4 cut(s)	460, 884, 918, 1022
AspS9I	GGNCC	2 cut(s)	26, 357
AsuHPI	GGTGA	4 cut(s)	360, 402, 929, 1024
AsuNHI	GCTAGC	1 cut(s)	956
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	2 cut(s)	43, 255
BamHI	GGATCC	2 cut(s)	148, 331
BanI	GGYRCC	2 cut(s)	250, 881
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	6 cut(s)	176, 289, 556, 992, 1034, 1052
BccI	CCATC	3 cut(s)	135, 379, 559
BciT130I	CCWGG	2 cut(s)	117, 257
BciVI	GTATCC	1 cut(s)	771
BclI	TGATCA	1 cut(s)	342
BfaI	CTAG	2 cut(s)	863, 957
BfmI	CTRYAG	1 cut(s)	1038
BfoI	RGCGCY	2 cut(s)	885, 919
BfrI	CTTAAG	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	771
BglII	AGATCT	1 cut(s)	662
BisI	GCNGC	6 cut(s)	165, 278, 570, 981, 1023, 1041
BlsI	GCNGC	6 cut(s)	166, 279, 571, 982, 1024, 1042
Bme1390I	CCNGG	2 cut(s)	117, 257
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	26, 357
BmiI	GGNNCC	5 cut(s)	27, 150, 252, 333, 883
BmrFI	CCNGG	2 cut(s)	117, 257
BmsI	GCATC	2 cut(s)	181, 704
BmtI	GCTAGC	1 cut(s)	960
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	710
BsaBI	GATNNNNATC	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	882
BsaJI	CCNNGG	2 cut(s)	116, 255
Bse1I	ACTGG	1 cut(s)	1072
Bse3DI	GCAATG	1 cut(s)	804
Bse8I	GATNNNNATC	1 cut(s)	824
BseBI	CCWGG	2 cut(s)	117, 257
BseDI	CCNNGG	2 cut(s)	116, 255
BseGI	GGATG	3 cut(s)	172, 371, 570
BseJI	GATNNNNATC	1 cut(s)	824
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	2 cut(s)	12, 728
BseNI	ACTGG	1 cut(s)	1072
BseSI	GKGCMC	2 cut(s)	43, 255
BseXI	GCAGC	6 cut(s)	176, 289, 556, 992, 1034, 1052
BshFI	GGCC	2 cut(s)	28, 205
BshNI	GGYRCC	2 cut(s)	250, 881
BsnI	GGCC	2 cut(s)	28, 205
Bsp1286I	GDGCHC	2 cut(s)	43, 255
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
BspANI	GGCC	2 cut(s)	28, 205
BspCNI	CTCAG	2 cut(s)	13, 727
BspLI	GGNNCC	5 cut(s)	27, 150, 252, 333, 883
BspMAI	CTGCAG	1 cut(s)	1042
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	7 cut(s)	143, 156, 190, 326, 339, 514, 833
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	2 cut(s)	250, 881
BspTI	CTTAAG	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	804
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	1072
BssECI	CCNNGG	2 cut(s)	116, 255
BssMI	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
BssNI	GRCGYC	1 cut(s)	882
Bst2UI	CCWGG	2 cut(s)	117, 257
Bst4CI	ACNGT	2 cut(s)	676, 1005
Bst6I	CTCTTC	1 cut(s)	906
BstACI	GRCGYC	1 cut(s)	882
BstAFI	CTTAAG	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	958
BstDEI	CTNAG	3 cut(s)	21, 714, 782
BstF5I	GGATG	3 cut(s)	172, 371, 570
BstH2I	RGCGCY	2 cut(s)	885, 919
BstHHI	GCGC	4 cut(s)	460, 884, 918, 1022
BstKTI	GATC	8 cut(s)	151, 185, 334, 345, 509, 612, 665, 828
BstMBI	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 464, 701
BstNI	CCWGG	2 cut(s)	117, 257
BstSCI	CCNGG	2 cut(s)	115, 255
BstSFI	CTRYAG	1 cut(s)	1038
BstSLI	GKGCMC	2 cut(s)	43, 255
BstV1I	GCAGC	6 cut(s)	176, 289, 556, 992, 1034, 1052
BstX2I	RGATCY	4 cut(s)	148, 182, 331, 662
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	4 cut(s)	148, 182, 331, 662
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	2 cut(s)	28, 205
BtsCI	GGATG	3 cut(s)	172, 371, 570
BtsIMutI	CAGTG	2 cut(s)	41, 100
Cac8I	GCNNGC	1 cut(s)	958
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	4 cut(s)	460, 884, 918, 1022
Cfr13I	GGNCC	2 cut(s)	26, 357
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	6 cut(s)	36, 169, 237, 397, 737, 745
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	3 cut(s)	21, 714, 782
DinI	GGCGCC	1 cut(s)	883
DpnI	GATC	8 cut(s)	150, 184, 333, 344, 508, 611, 664, 827
DpnII	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	917
Eco57I	CTGAAG	2 cut(s)	198, 357
EcoRII	CCWGG	2 cut(s)	115, 255
EcoT22I	ATGCAT	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	883
EheI	GGCGCC	1 cut(s)	883
FaeI	CATG	6 cut(s)	39, 172, 240, 400, 740, 748
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	6 cut(s)	35, 168, 236, 396, 736, 744
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	6 cut(s)	165, 278, 570, 981, 1023, 1041
FokI	GGATG	3 cut(s)	159, 358, 577
Fsp4HI	GCNGC	6 cut(s)	165, 278, 570, 981, 1023, 1041
FspBI	CTAG	2 cut(s)	863, 957
FspI	TGCGCA	1 cut(s)	1021
GlaI	GCGC	4 cut(s)	459, 883, 917, 1021
GluI	GCNGC	6 cut(s)	165, 278, 570, 981, 1023, 1041
HaeII	RGCGCY	2 cut(s)	885, 919
HaeIII	GGCC	2 cut(s)	28, 205
HhaI	GCGC	4 cut(s)	460, 884, 918, 1022
Hin1I	GRCGYC	1 cut(s)	882
Hin1II	CATG	6 cut(s)	39, 172, 240, 400, 740, 748
Hin6I	GCGC	4 cut(s)	458, 882, 916, 1020
HinP1I	GCGC	4 cut(s)	458, 882, 916, 1020
HincII	GTYRAC	2 cut(s)	301, 672
HindII	GTYRAC	2 cut(s)	301, 672
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	2 cut(s)	758, 869
HpaI	GTTAAC	1 cut(s)	672
HphI	GGTGA	4 cut(s)	360, 402, 929, 1024
Hpy166II	GTNNAC	5 cut(s)	77, 234, 301, 619, 672
Hpy188I	TCNGA	4 cut(s)	421, 546, 662, 789
Hpy188III	TCNNGA	6 cut(s)	100, 176, 335, 434, 448, 689
Hpy8I	GTNNAC	5 cut(s)	77, 234, 301, 619, 672
HpyAV	CCTTC	3 cut(s)	173, 448, 768
HpyCH4III	ACNGT	2 cut(s)	676, 1005
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	7 cut(s)	164, 172, 641, 740, 809, 980, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 464, 701
HpyF3I	CTNAG	3 cut(s)	21, 714, 782
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	882
Hsp92II	CATG	6 cut(s)	39, 172, 240, 400, 740, 748
HspAI	GCGC	4 cut(s)	458, 882, 916, 1020
KasI	GGCGCC	1 cut(s)	881
Ksp22I	TGATCA	1 cut(s)	342
KspAI	GTTAAC	1 cut(s)	672
Kzo9I	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
LguI	GCTCTTC	1 cut(s)	906
Lsp1109I	GCAGC	6 cut(s)	176, 289, 556, 992, 1034, 1052
LweI	GCATC	2 cut(s)	181, 704
MaeI	CTAG	2 cut(s)	863, 957
MaeII	ACGT	1 cut(s)	303
MalI	GATC	8 cut(s)	150, 184, 333, 344, 508, 611, 664, 827
MboI	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
MboII	GAAGA	5 cut(s)	121, 177, 463, 920, 923
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	4 cut(s)	148, 182, 331, 662
MhlI	GDGCHC	2 cut(s)	43, 255
MluCI	AATT	6 cut(s)	86, 472, 512, 605, 931, 1014
Mly113I	GGCGCC	1 cut(s)	882
MlyI	GAGTC	2 cut(s)	752, 878
MmeI	TCCRAC	2 cut(s)	767, 1088
MnlI	CCTC	6 cut(s)	16, 385, 685, 816, 950, 1045
Mph1103I	ATGCAT	1 cut(s)	174
MseI	TTAA	4 cut(s)	326, 488, 671, 995
MslI	CAYNNNNRTG	1 cut(s)	34
MspCI	CTTAAG	1 cut(s)	487
MspR9I	CCNGG	2 cut(s)	117, 257
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	117, 257
MwoI	GCNNNNNNNGC	3 cut(s)	161, 464, 701
NarI	GGCGCC	1 cut(s)	882
NdeII	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
NheI	GCTAGC	1 cut(s)	956
NlaIII	CATG	6 cut(s)	39, 172, 240, 400, 740, 748
NlaIV	GGNNCC	5 cut(s)	27, 150, 252, 333, 883
NsbI	TGCGCA	1 cut(s)	1021
NsiI	ATGCAT	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	906
PkrI	GCNGC	6 cut(s)	166, 279, 571, 982, 1024, 1042
PleI	GAGTC	2 cut(s)	752, 877
PluTI	GGCGCC	1 cut(s)	885
PpsI	GAGTC	2 cut(s)	752, 877
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	115, 255
PspGI	CCWGG	2 cut(s)	115, 255
PspN4I	GGNNCC	5 cut(s)	27, 150, 252, 333, 883
PspPI	GGNCC	2 cut(s)	26, 357
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	4 cut(s)	148, 182, 331, 662
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	4 cut(s)	326, 488, 671, 995
SatI	GCNGC	6 cut(s)	165, 278, 570, 981, 1023, 1041
Sau3AI	GATC	8 cut(s)	148, 182, 331, 342, 506, 609, 662, 825
Sau96I	GGNCC	2 cut(s)	26, 357
SchI	GAGTC	2 cut(s)	752, 878
ScrFI	CCNGG	2 cut(s)	117, 257
SduI	GDGCHC	2 cut(s)	43, 255
SfaNI	GCATC	2 cut(s)	181, 704
SfcI	CTRYAG	1 cut(s)	1038
SfoI	GGCGCC	1 cut(s)	883
SinI	GGWCC	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	487, 689
SmoI	CTYRAG	2 cut(s)	487, 689
Sse9I	AATT	6 cut(s)	86, 472, 512, 605, 931, 1014
SspDI	GGCGCC	1 cut(s)	881
SspI	AATATT	1 cut(s)	794
SspMI	CTAG	2 cut(s)	863, 957
StyD4I	CCNGG	2 cut(s)	115, 255
TaaI	ACNGT	2 cut(s)	676, 1005
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	139, 449, 626
TasI	AATT	6 cut(s)	86, 472, 512, 605, 931, 1014
TatI	WGTACW	1 cut(s)	526
Tru1I	TTAA	4 cut(s)	326, 488, 671, 995
Tru9I	TTAA	4 cut(s)	326, 488, 671, 995
TscAI	CASTG	2 cut(s)	48, 100
TseI	GCWGC	6 cut(s)	164, 277, 569, 980, 1022, 1040
TspDTI	ATGAA	5 cut(s)	385, 418, 725, 921, 959
TspRI	CASTG	2 cut(s)	48, 100
Vha464I	CTTAAG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	2 cut(s)	863, 957
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.