Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

19317936 .. 19319025

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1118400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTAGCACCGACTTCAATAGTTTTTTCTGCAAATGAGTGGTTGAGAGGACGTCTTGAGTTGGTATGCACTATTGTTCTCTCAGCCTCAGCATTTGCCGTTACTTTGATTCGATTCAAGGCTTCTTCGTCTGGATTTATTGGCATGATACTATCTTATGGTCTGTCATTGAAAGTATTTGTTGTAATCGCTGTCCAATATCAGTGCATGCTTGCAAATGCCATCATATCTGTAGAAAGGGTAGAACAATACATGCATATTCCTAGCGAAGCTCTAGAAGTAATAGAAGACAACCGACCTGCGCACGAGTGGCCTACTGTTGGTAAAGTGGAAATACTCGATTTAAAGGTAAGGTACAAGCCAAATGCTCCGCTAGTTCTTCGTGGGATAAATTGCACAATTGAAGGAGGGGACAAAATTGGGATTGTTGGCCGGACTGGAAATGGAAAGACAACTCTTATCAGCGTTGTGTTTCATCTGGTAGAGCCGACAGAAGGAAAGGTTATTGTAGATGACTATGACATTTGCACAATTGGACTTCATGATTTAAGATCACGTTTTGGGGTCATCCCACAAGATCCGACTCTATTCAGTGGGTCTGTGAGATTCAATCTAGACCCCTTATCTAGGCATACTGATAACCAAATATGGGCGGTGCTCGACAAATGTCGGTTGCGAGAAGCCATTCAAGAAAAAAGAAGACGGCCTGGATTCTTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

241

Amino Acids

26.81

Weight (kDa)

8.61

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	127 - 230	1.4e-15	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	55
Acc16I	TGCGCA	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	2 cut(s)	371, 653
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	320, 494, 627, 649
AgsI	TTSAA	6 cut(s)	18, 118, 172, 404, 610, 689
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw21I	GWGCWC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	3 cut(s)	311, 430, 704
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	304
AsuNHI	GCTAGC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	2 cut(s)	294, 706
Bbv12I	GWGCWC	1 cut(s)	660
BbvCI	CCTCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	83, 719
BciT130I	CCWGG	1 cut(s)	708
BfaI	CTAG	6 cut(s)	5, 264, 275, 374, 614, 627
BfmI	CTRYAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	708
BmrFI	CCNGG	1 cut(s)	708
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	666
BpiI	GAAGAC	2 cut(s)	294, 706
Bpu10I	CCTNAGC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 494, 627, 649
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	708
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	320, 494, 627, 649
BseMII	CTCAG	2 cut(s)	96, 102
BseNI	ACTGG	1 cut(s)	442
BshFI	GGCC	3 cut(s)	313, 432, 706
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	320, 494, 627, 649
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	313, 432, 706
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	551, 577
BspACI	CCGC	2 cut(s)	371, 653
BspANI	GGCC	3 cut(s)	313, 432, 706
BspCNI	CTCAG	2 cut(s)	95, 101
BspHI	TCATGA	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	551, 577
BssNI	GRCGYC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	6, 209, 213
BstDEI	CTNAG	2 cut(s)	82, 88
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	554, 580
BstMBI	GATC	2 cut(s)	551, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	2 cut(s)	211, 256
BstPAI	GACNNNNGTC	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	706
BstSFI	CTRYAG	1 cut(s)	231
BstV2I	GAAGAC	2 cut(s)	294, 706
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	3 cut(s)	313, 432, 706
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	209, 598
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	6, 209, 213
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	4 cut(s)	145, 208, 253, 542
CviJI	RGCY	9 cut(s)	86, 122, 272, 313, 361, 432, 487, 683, 706
CviKI_1	RGCY	9 cut(s)	86, 122, 272, 313, 361, 432, 487, 683, 706
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	82, 88
DpnI	GATC	2 cut(s)	553, 579
DpnII	GATC	2 cut(s)	551, 577
DraI	TTTAAA	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	706
EcoT22I	ATGCAT	1 cut(s)	258
FaeI	CATG	4 cut(s)	148, 211, 256, 545
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	144, 207, 252, 541
FokI	GGATG	1 cut(s)	554
FspBI	CTAG	6 cut(s)	5, 264, 275, 374, 614, 627
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	313, 432, 706
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	148, 211, 256, 545
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	5 cut(s)	109, 114, 583, 606, 711
HpaII	CCGG	1 cut(s)	433
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	6 cut(s)	56, 132, 275, 542, 614, 689
HpyAV	CCTTC	2 cut(s)	398, 488
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	52, 556
HpyCH4V	TGCA	7 cut(s)	32, 69, 207, 215, 256, 396, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	82, 88
HpySE526I	ACGT	2 cut(s)	52, 556
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	148, 211, 256, 545
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	551, 577
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	6 cut(s)	117, 312, 423, 446, 464, 693
MaeI	CTAG	6 cut(s)	5, 264, 275, 374, 614, 627
MaeII	ACGT	2 cut(s)	52, 556
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	553, 579
MboI	GATC	2 cut(s)	551, 577
MboII	GAAGA	4 cut(s)	117, 299, 371, 711
MfeI	CAATTG	2 cut(s)	399, 531
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	4 cut(s)	391, 399, 417, 531
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	3 cut(s)	41, 97, 401
Mph1103I	ATGCAT	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	2 cut(s)	344, 548
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	708
MunI	CAATTG	2 cut(s)	399, 531
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	2 cut(s)	551, 577
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	148, 211, 256, 545
NsbI	TGCGCA	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	2 cut(s)	211, 256
PaeI	GCATGC	1 cut(s)	211
PagI	TCATGA	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	4 cut(s)	109, 114, 606, 711
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PshAI	GACNNNNGTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	344, 548
Sau3AI	GATC	2 cut(s)	551, 577
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	1 cut(s)	660
SetI	ASST	8 cut(s)	55, 274, 301, 351, 356, 504, 559, 722
SfcI	CTRYAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	4 cut(s)	391, 399, 417, 531
SsiI	CCGC	2 cut(s)	371, 653
SspMI	CTAG	6 cut(s)	5, 264, 275, 374, 614, 627
StyD4I	CCNGG	1 cut(s)	706
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	2 cut(s)	55, 559
TaqI	TCGA	3 cut(s)	112, 339, 660
TasI	AATT	4 cut(s)	391, 399, 417, 531
TfiI	GAWTC	4 cut(s)	109, 114, 606, 711
Tru1I	TTAA	2 cut(s)	344, 548
Tru9I	TTAA	2 cut(s)	344, 548
TscAI	CASTG	2 cut(s)	209, 598
TspDTI	ATGAA	2 cut(s)	464, 530
TspRI	CASTG	2 cut(s)	209, 598
XagI	CCTNNNNNAGG	1 cut(s)	625
XbaI	TCTAGA	2 cut(s)	274, 613
XceI	RCATGY	2 cut(s)	211, 256
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	6 cut(s)	5, 264, 275, 374, 614, 627
ZraI	GACGTC	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.