Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

66202181 .. 66204412

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG438900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATCGCAATTGATCTTGGTCTACCTGTCGATTGGATTTTCTGCAACATTTATTTTACTGTTCAGATCTCTGTTAACAGTTGTTATGGGTCTTGAGGCATCAAGGGCTTTATTTTCTCAGCTACTAAACTCTCTATTTCATGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGCTTTCATCTGATCCAAGTATCGTAGATCTTGATATTCCATTCAGCCTTGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACTAAGTCTTTTGTAGCAAACCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAACGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGTTCTTGGGAAGTGTCAGCTTCGGGAGGCTGTTCAAGAAAAAGAATGCGGCGGCTTAGACTCTTTAGGGAAAATAGTGGAGTATGATGAGCCAACGAAACTAATGAAAAGAGAAGGTTCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCATCTTCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

285

Amino Acids

31.75

Weight (kDa)

5.8

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	9 - 221	1.5e-27	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	3 cut(s)	517, 726, 729
AclWI	GGATC	2 cut(s)	230, 434
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	821
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	505, 602, 713
AluBI	AGCT	9 cut(s)	33, 154, 290, 326, 385, 500, 674, 697, 811
AluI	AGCT	9 cut(s)	33, 154, 290, 326, 385, 500, 674, 697, 811
Alw26I	GTCTC	1 cut(s)	834
AlwI	GGATC	2 cut(s)	230, 434
AlwNI	CAGNNNCTG	1 cut(s)	473
ApeKI	GCWGC	6 cut(s)	5, 326, 581, 623, 634, 808
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	2 cut(s)	485, 623
AsuHPI	GGTGA	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	5 cut(s)	313, 593, 635, 646, 820
BccI	CCATC	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	834
BfaI	CTAG	3 cut(s)	323, 464, 558
BfmI	CTRYAG	3 cut(s)	386, 632, 843
BfoI	RGCGCY	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	2 cut(s)	98, 250
BisI	GCNGC	8 cut(s)	6, 327, 582, 624, 635, 727, 730, 809
BlsI	GCNGC	8 cut(s)	7, 328, 583, 625, 636, 728, 731, 810
BmcAI	AGTACT	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	484
BmsI	GCATC	1 cut(s)	140
BmtI	GCTAGC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	834
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	666, 830
Bse8I	GATNNNNATC	1 cut(s)	425
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	666, 830
BseXI	GCAGC	5 cut(s)	313, 593, 635, 646, 820
BshNI	GGYRCC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	834
BsmI	GAATGC	1 cut(s)	728
Bso31I	GGTCTC	1 cut(s)	834
Bsp143I	GATC	5 cut(s)	45, 98, 235, 250, 426
BspACI	CCGC	3 cut(s)	517, 726, 729
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	484
BspMAI	CTGCAG	2 cut(s)	636, 847
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	230, 434
BspT107I	GGYRCC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	666, 830
BssMI	GATC	5 cut(s)	45, 98, 235, 250, 426
BssNI	GRCGYC	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	93, 112, 606
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	4 cut(s)	150, 218, 441, 733
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	485, 623
BstKTI	GATC	5 cut(s)	48, 101, 238, 253, 429
BstMAI	GTCTC	1 cut(s)	834
BstMBI	GATC	5 cut(s)	45, 98, 235, 250, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 287
BstSFI	CTRYAG	3 cut(s)	386, 632, 843
BstV1I	GCAGC	5 cut(s)	313, 593, 635, 646, 820
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	98, 250
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	2 cut(s)	98, 250
BsuI	GTATCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	485, 623
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	3 cut(s)	173, 181, 336
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	150, 218, 441, 733
DinI	GGCGCC	1 cut(s)	484
DpnI	GATC	5 cut(s)	47, 100, 237, 252, 428
DpnII	GATC	5 cut(s)	45, 98, 235, 250, 426
Eco31I	GGTCTC	1 cut(s)	834
Eco57I	CTGAAG	1 cut(s)	821
EgeI	GGCGCC	1 cut(s)	484
EheI	GGCGCC	1 cut(s)	484
FaeI	CATG	3 cut(s)	176, 184, 339
FatI	CATG	3 cut(s)	172, 180, 335
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	8 cut(s)	6, 327, 582, 624, 635, 727, 730, 809
Fsp4HI	GCNGC	8 cut(s)	6, 327, 582, 624, 635, 727, 730, 809
FspBI	CTAG	3 cut(s)	323, 464, 558
FspI	TGCGCA	1 cut(s)	622
GlaI	GCGC	2 cut(s)	484, 622
GluI	GCNGC	8 cut(s)	6, 327, 582, 624, 635, 727, 730, 809
HaeII	RGCGCY	1 cut(s)	486
HhaI	GCGC	2 cut(s)	485, 623
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	176, 184, 339
Hin6I	GCGC	2 cut(s)	483, 621
HinP1I	GCGC	2 cut(s)	483, 621
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	194, 470, 598, 737, 848
HpaI	GTTAAC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	55, 108, 797
Hpy188I	TCNGA	2 cut(s)	98, 235
Hpy188III	TCNNGA	4 cut(s)	125, 254, 701, 713
Hpy8I	GTNNAC	3 cut(s)	55, 108, 797
HpyAV	CCTTC	2 cut(s)	204, 785
HpyCH4III	ACNGT	3 cut(s)	93, 112, 606
HpyCH4V	TGCA	6 cut(s)	77, 176, 410, 581, 634, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 287
HpyF3I	CTNAG	4 cut(s)	150, 218, 441, 733
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	176, 184, 339
HspAI	GCGC	2 cut(s)	483, 621
KasI	GGCGCC	1 cut(s)	482
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	45, 98, 235, 250, 426
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	8 cut(s)	71, 191, 359, 359, 465, 647, 662, 811
Lsp1109I	GCAGC	5 cut(s)	313, 593, 635, 646, 820
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	3 cut(s)	323, 464, 558
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	47, 100, 237, 252, 428
MboI	GATC	5 cut(s)	45, 98, 235, 250, 426
MboII	GAAGA	3 cut(s)	521, 524, 827
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	2 cut(s)	98, 250
MluCI	AATT	4 cut(s)	41, 378, 532, 615
Mly113I	GGCGCC	1 cut(s)	483
MlyI	GAGTC	3 cut(s)	188, 479, 731
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	5 cut(s)	121, 213, 417, 551, 697
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	362
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	728
MwoI	GCNNNNNNNGC	2 cut(s)	137, 287
NarI	GGCGCC	1 cut(s)	483
NdeII	GATC	5 cut(s)	45, 98, 235, 250, 426
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	3 cut(s)	176, 184, 339
NlaIV	GGNNCC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	622
PctI	GAATGC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	598, 848
PkrI	GCNGC	8 cut(s)	7, 328, 583, 625, 636, 728, 731, 810
PleI	GAGTC	3 cut(s)	188, 478, 731
PluTI	GGCGCC	1 cut(s)	486
PpsI	GAGTC	3 cut(s)	188, 478, 731
PspN4I	GGNNCC	1 cut(s)	484
PstI	CTGCAG	2 cut(s)	636, 847
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	98, 250
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	8 cut(s)	6, 327, 582, 624, 635, 727, 730, 809
Sau3AI	GATC	5 cut(s)	45, 98, 235, 250, 426
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	3 cut(s)	188, 479, 731
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	3 cut(s)	386, 632, 843
SfoI	GGCGCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	41, 378, 532, 615
SsiI	CCGC	3 cut(s)	517, 726, 729
SspDI	GGCGCC	1 cut(s)	482
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	3 cut(s)	323, 464, 558
TaaI	ACNGT	3 cut(s)	93, 112, 606
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	41, 378, 532, 615
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	2 cut(s)	729, 732
TfiI	GAWTC	2 cut(s)	598, 848
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	6 cut(s)	5, 326, 581, 623, 634, 808
TspDTI	ATGAA	5 cut(s)	161, 219, 522, 560, 797
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	3 cut(s)	323, 464, 558
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.