Rh1AG007600

membrane protein C776.05-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001692
Physical Location & Seq
Reverse (-)
1130887 .. 1133523
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG007600.1

Sequence Viewer

Length: 1227 bp
ATGGGTTTTGTGAGAGATTTCGAGAACGTGGATGAGGCATTTGGTAGTAGAGACATTCAATTGAGTTGGGTTGATGTGAGGTATGAATTGGAGTATGGTGAGAATGAGGTTGGATTGAAATGTGGTTTTTTCGAAAGGGGGATTAGCTCCTCTGATTCAATTGAGTCTTGGAATATCAGATGTTATGGGGATGCCTTTGGAGTCATGAAGTCGCAAACAAGAGGTCATGAGGTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGACTTCTGCTACTATGCCAATACGATCTTTTTGGTTGACCTTCTTCTATATCCAAGGAATGAAAAGTTTTTCATGGTTTGTTTCTCATTTGCTGAGGGGCCATTAGCATGGGCACTGATTGTTTGGCATTGTAGCTTGGTTTTTAGTTCACTTGACAAATTAGTCAGTGTCCTGATACATCTTTTACCTGGGTTGGTTTTCTTCACTATTCGATGGTGGGATCCAGCAACATGTGCAGCCATGCATCTTGAAGGATCTTCTGCCAGAGCTTCTTGGCCTTATGTAGAAAGCAAAACTTATCTGTGGACATGGTTGTTTGTGGTGCCCCTGGTCGCATACTCCCTCTGGCAGCTTTTGTATTTTCTCATTGTCAACGTTTTACGCCGACAAAGGCTGTTAAGGGATCCTGAAAGAACTCTCGAAGAAGGCGCAAAAAGCAAACAATTTGTGGTGGCGCTTAAGCGGTTTGCTTGGGGATCAAAATCGATTGTTTATGTAAATTGTTCAAATAGTCAGATAGCACAGAACTCTTGGATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATCACAATTGATCTTGGTCTACCTGTCGATTGGATTTTCTGCAACATTTATTTTACTGATCAGATCTCTGTTAACAGTTGGTTTGGGTCTTGAGGCATCAAGGGCTTTATTTTCTCAGCTACTAAACTCTCTATTTCATGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2838

Protein Analysis

408

Amino Acids

46.49

Weight (kDa)

8.09

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2838 PF10998 94 - 150 1.3e-17 Protein of unknown function (DUF2838)
ABC_membrane PF00664 275 - 347 5.9e-09 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 443
AccB1I GGYRCC 2 cut(s) 604, 1133
AccI GTMKAC 1 cut(s) 870
AciI CCGC 1 cut(s) 745
AclI AACGTT 1 cut(s) 657
AclWI GGATC 7 cut(s) 497, 510, 544, 680, 693, 766, 1085
AcsI RAATTY 1 cut(s) 1183
AcyI GRCGYC 1 cut(s) 1134
AfeI AGCGCT 1 cut(s) 1169
AflII CTTAAG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 6 cut(s) 59, 118, 159, 533, 789, 1156
AjnI CCWGG 2 cut(s) 469, 609
AluBI AGCT 7 cut(s) 147, 417, 551, 634, 849, 970, 1151
AluI AGCT 7 cut(s) 147, 417, 551, 634, 849, 970, 1151
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 7 cut(s) 497, 510, 544, 680, 693, 766, 1085
AlwNI CAGNNNCTG 1 cut(s) 1124
Aor51HI AGCGCT 1 cut(s) 1169
AoxI GGCC 2 cut(s) 380, 557
ApeKI GCWGC 3 cut(s) 518, 631, 821
ApoI RAATTY 1 cut(s) 1183
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
AspLEI GCGC 4 cut(s) 713, 739, 1136, 1170
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 110, 244, 1181
AsuII TTCGAA 1 cut(s) 132
AsuNHI GCTAGC 1 cut(s) 1208
BaeGI GKGCMC 2 cut(s) 397, 609
BamHI GGATCC 2 cut(s) 502, 685
BanI GGYRCC 2 cut(s) 604, 1133
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 530, 643, 808
BccI CCATC 2 cut(s) 489, 811
BciT130I CCWGG 2 cut(s) 471, 611
BciVI GTATCC 1 cut(s) 1023
BclI TGATCA 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 2 cut(s) 1115, 1209
BfoI RGCGCY 3 cut(s) 740, 1137, 1171
BfrI CTTAAG 1 cut(s) 740
BfuI GTATCC 1 cut(s) 1023
BglII AGATCT 1 cut(s) 914
BisI GCNGC 3 cut(s) 519, 632, 822
BlsI GCNGC 3 cut(s) 520, 633, 823
Bme1390I CCNGG 2 cut(s) 471, 611
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 5 cut(s) 381, 504, 606, 687, 1135
BmrFI CCNGG 2 cut(s) 471, 611
BmsI GCATC 3 cut(s) 181, 535, 956
BmtI GCTAGC 1 cut(s) 1212
Bpu10I CCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 962
Bsa29I ATCGAT 1 cut(s) 767
BsaBI GATNNNNATC 2 cut(s) 763, 1076
BsaHI GRCGYC 1 cut(s) 1134
BsaJI CCNNGG 3 cut(s) 335, 470, 609
Bse3DI GCAATG 1 cut(s) 268
Bse8I GATNNNNATC 2 cut(s) 763, 1076
BseBI CCWGG 2 cut(s) 471, 611
BseCI ATCGAT 1 cut(s) 767
BseDI CCNNGG 3 cut(s) 335, 470, 609
BseGI GGATG 3 cut(s) 37, 196, 822
BseJI GATNNNNATC 2 cut(s) 763, 1076
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 366, 980
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 2 cut(s) 397, 609
BseXI GCAGC 3 cut(s) 530, 643, 808
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 2 cut(s) 382, 559
BshNI GGYRCC 2 cut(s) 604, 1133
BshVI ATCGAT 1 cut(s) 767
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 382, 559
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 397, 609
Bsp143I GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
BspACI CCGC 1 cut(s) 745
BspANI GGCC 2 cut(s) 382, 559
BspCNI CTCAG 2 cut(s) 367, 979
BspDI ATCGAT 1 cut(s) 767
BspHI TCATGA 2 cut(s) 204, 226
BspLI GGNNCC 5 cut(s) 381, 504, 606, 687, 1135
BspOI GCTAGC 1 cut(s) 1212
BspPI GGATC 7 cut(s) 497, 510, 544, 680, 693, 766, 1085
BspQI GCTCTTC 1 cut(s) 1158
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 2 cut(s) 604, 1133
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 335, 470, 609
BssMI GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
BssNI GRCGYC 1 cut(s) 1134
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 471, 611
Bst4CI ACNGT 1 cut(s) 928
Bst6I CTCTTC 2 cut(s) 230, 1158
BstACI GRCGYC 1 cut(s) 1134
BstAFI CTTAAG 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 1210
BstDEI CTNAG 3 cut(s) 375, 966, 1034
BstF5I GGATG 3 cut(s) 37, 196, 822
BstH2I RGCGCY 3 cut(s) 740, 1137, 1171
BstHHI GCGC 4 cut(s) 713, 739, 1136, 1170
BstKTI GATC 9 cut(s) 309, 505, 539, 688, 761, 864, 912, 917, 1080
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
BstMWI GCNNNNNNNGC 3 cut(s) 515, 717, 953
BstNI CCWGG 2 cut(s) 471, 611
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 2 cut(s) 469, 609
BstSLI GKGCMC 2 cut(s) 397, 609
BstV1I GCAGC 3 cut(s) 530, 643, 808
BstX2I RGATCY 4 cut(s) 502, 536, 685, 914
BstXI CCANNNNNNTGG 1 cut(s) 390
BstYI RGATCY 4 cut(s) 502, 536, 685, 914
Bsu15I ATCGAT 1 cut(s) 767
BsuI GTATCC 1 cut(s) 1023
BsuRI GGCC 2 cut(s) 382, 559
BsuTUI ATCGAT 1 cut(s) 767
BtsCI GGATG 3 cut(s) 37, 196, 822
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 3 cut(s) 395, 454, 1056
Cac8I GCNNGC 1 cut(s) 1210
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 2 cut(s) 204, 226
CfoI GCGC 4 cut(s) 713, 739, 1136, 1170
Cfr13I GGNCC 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 767
CviAII CATG 9 cut(s) 205, 227, 355, 390, 513, 523, 591, 989, 997
DdeI CTNAG 3 cut(s) 375, 966, 1034
DinI GGCGCC 1 cut(s) 1135
DpnI GATC 9 cut(s) 308, 504, 538, 687, 760, 863, 911, 916, 1079
DpnII GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
Eam1104I CTCTTC 2 cut(s) 230, 1158
EarI CTCTTC 2 cut(s) 230, 1158
Eco130I CCWWGG 1 cut(s) 335
Eco47III AGCGCT 1 cut(s) 1169
EcoRII CCWGG 2 cut(s) 469, 609
EcoT14I CCWWGG 1 cut(s) 335
EcoT22I ATGCAT 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 1135
EheI GGCGCC 1 cut(s) 1135
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 9 cut(s) 208, 230, 358, 393, 516, 526, 594, 992, 1000
FalI AAGNNNNNCTT 2 cut(s) 562, 594
FatI CATG 9 cut(s) 204, 226, 354, 389, 512, 522, 590, 988, 996
FbaI TGATCA 1 cut(s) 909
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 3 cut(s) 519, 632, 822
FokI GGATG 3 cut(s) 44, 203, 829
Fsp4HI GCNGC 3 cut(s) 519, 632, 822
FspBI CTAG 2 cut(s) 1115, 1209
GlaI GCGC 4 cut(s) 712, 738, 1135, 1169
GluI GCNGC 3 cut(s) 519, 632, 822
HaeII RGCGCY 3 cut(s) 740, 1137, 1171
HaeIII GGCC 2 cut(s) 382, 559
HhaI GCGC 4 cut(s) 713, 739, 1136, 1170
Hin1I GRCGYC 1 cut(s) 1134
Hin1II CATG 9 cut(s) 208, 230, 358, 393, 516, 526, 594, 992, 1000
Hin6I GCGC 4 cut(s) 711, 737, 1134, 1168
HinP1I GCGC 4 cut(s) 711, 737, 1134, 1168
HincII GTYRAC 3 cut(s) 319, 655, 924
HindII GTYRAC 3 cut(s) 319, 655, 924
HinfI GANTC 6 cut(s) 155, 164, 201, 277, 1010, 1121
HpaI GTTAAC 1 cut(s) 924
HphI GGTGA 3 cut(s) 110, 244, 1181
Hpy166II GTNNAC 6 cut(s) 319, 431, 588, 655, 871, 924
Hpy188I TCNGA 5 cut(s) 154, 179, 798, 914, 1041
Hpy188III TCNNGA 9 cut(s) 22, 205, 227, 281, 454, 530, 689, 701, 941
Hpy8I GTNNAC 6 cut(s) 319, 431, 588, 655, 871, 924
HpyAV CCTTC 4 cut(s) 332, 527, 701, 1020
HpyCH4III ACNGT 1 cut(s) 928
HpyCH4IV ACGT 2 cut(s) 27, 657
HpyCH4V TGCA 5 cut(s) 518, 526, 893, 992, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 717, 953
HpyF3I CTNAG 3 cut(s) 375, 966, 1034
HpySE526I ACGT 2 cut(s) 27, 657
Hsp92I GRCGYC 1 cut(s) 1134
Hsp92II CATG 9 cut(s) 208, 230, 358, 393, 516, 526, 594, 992, 1000
HspAI GCGC 4 cut(s) 711, 737, 1134, 1168
KasI GGCGCC 1 cut(s) 1133
Ksp22I TGATCA 1 cut(s) 909
KspAI GTTAAC 1 cut(s) 924
Kzo9I GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
LguI GCTCTTC 1 cut(s) 1158
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 3 cut(s) 530, 643, 808
LweI GCATC 3 cut(s) 181, 535, 956
MaeI CTAG 2 cut(s) 1115, 1209
MaeII ACGT 2 cut(s) 27, 657
MalI GATC 9 cut(s) 308, 504, 538, 687, 760, 863, 911, 916, 1079
MboI GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
MboII GAAGA 8 cut(s) 247, 286, 317, 475, 531, 716, 1172, 1175
MfeI CAATTG 3 cut(s) 59, 159, 857
MflI RGATCY 4 cut(s) 502, 536, 685, 914
MhlI GDGCHC 2 cut(s) 397, 609
MluCI AATT 8 cut(s) 59, 86, 159, 440, 725, 781, 857, 1183
Mly113I GGCGCC 1 cut(s) 1134
MlyI GAGTC 4 cut(s) 173, 210, 1004, 1130
MmeI TCCRAC 2 cut(s) 91, 1019
Mph1103I ATGCAT 1 cut(s) 528
MseI TTAA 3 cut(s) 680, 741, 923
MslI CAYNNNNRTG 1 cut(s) 388
MspCI CTTAAG 1 cut(s) 740
MspR9I CCNGG 2 cut(s) 471, 611
MunI CAATTG 3 cut(s) 59, 159, 857
MvaI CCWGG 2 cut(s) 471, 611
MwoI GCNNNNNNNGC 3 cut(s) 515, 717, 953
NarI GGCGCC 1 cut(s) 1134
NdeII GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
NheI GCTAGC 1 cut(s) 1208
NlaIII CATG 9 cut(s) 208, 230, 358, 393, 516, 526, 594, 992, 1000
NlaIV GGNNCC 5 cut(s) 381, 504, 606, 687, 1135
NsiI ATGCAT 1 cut(s) 528
NspI RCATGY 1 cut(s) 516
NspV TTCGAA 1 cut(s) 132
PagI TCATGA 2 cut(s) 204, 226
PciI ACATGT 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 1158
PfeI GAWTC 2 cut(s) 155, 277
PkrI GCNGC 3 cut(s) 520, 633, 823
PleI GAGTC 4 cut(s) 172, 209, 1004, 1129
PluTI GGCGCC 1 cut(s) 1137
PpsI GAGTC 4 cut(s) 172, 209, 1004, 1129
PscI ACATGT 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 657
Psp6I CCWGG 2 cut(s) 469, 609
PspGI CCWGG 2 cut(s) 469, 609
PspN4I GGNNCC 5 cut(s) 381, 504, 606, 687, 1135
PspPI GGNCC 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 4 cut(s) 502, 536, 685, 914
RseI CAYNNNNRTG 1 cut(s) 388
SapI GCTCTTC 1 cut(s) 1158
SaqAI TTAA 3 cut(s) 680, 741, 923
SatI GCNGC 3 cut(s) 519, 632, 822
Sau3AI GATC 9 cut(s) 306, 502, 536, 685, 758, 861, 909, 914, 1077
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 4 cut(s) 173, 210, 1004, 1130
ScrFI CCNGG 2 cut(s) 471, 611
SduI GDGCHC 2 cut(s) 397, 609
SfaNI GCATC 3 cut(s) 181, 535, 956
SfoI GGCGCC 1 cut(s) 1135
SfuI TTCGAA 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 740, 941
SmoI CTYRAG 2 cut(s) 740, 941
Sse9I AATT 8 cut(s) 59, 86, 159, 440, 725, 781, 857, 1183
SsiI CCGC 1 cut(s) 745
SspDI GGCGCC 1 cut(s) 1133
SspI AATATT 1 cut(s) 1046
SspMI CTAG 2 cut(s) 1115, 1209
StyD4I CCNGG 2 cut(s) 469, 609
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 928
TaiI ACGT 2 cut(s) 30, 660
TaqI TCGA 7 cut(s) 21, 132, 272, 493, 702, 767, 878
TasI AATT 8 cut(s) 59, 86, 159, 440, 725, 781, 857, 1183
TfiI GAWTC 2 cut(s) 155, 277
Tru1I TTAA 3 cut(s) 680, 741, 923
Tru9I TTAA 3 cut(s) 680, 741, 923
TscAI CASTG 3 cut(s) 402, 454, 1063
TseI GCWGC 3 cut(s) 518, 631, 821
TspDTI ATGAA 7 cut(s) 99, 221, 343, 357, 977, 1173, 1212
TspRI CASTG 3 cut(s) 402, 454, 1063
Vha464I CTTAAG 1 cut(s) 740
XapI RAATTY 1 cut(s) 1183
XceI RCATGY 1 cut(s) 516
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 2 cut(s) 1115, 1209
Zsp2I ATGCAT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.