Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

66204506 .. 66204778

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG439000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAAAGTCTAATTCTCTGTCATCTGCAAGCATCTCCTTATTATCAATTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCACATGTCCCTTCTGTCCAAAATTCTGGAACATCATCCGGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAATAAAGGTGACCAGCTGATTAAGATAGAAGAGAGGGAAATAGGAGACACTGGTTCGAGGCCATACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

8.73

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	2 cut(s)	54, 260
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	76
BmsI	GCATC	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	256
BseAI	TCCGGA	1 cut(s)	158
BseGI	GGATG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	56, 262
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	56, 262
BsoBI	CYCGRG	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	158
BspANI	GGCC	2 cut(s)	56, 262
BspEI	TCCGGA	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	30, 120
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	155
BstMAI	GTCTC	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	56, 262
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	30, 120
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	56, 63, 118, 176, 217, 262
CviKI_1	RGCY	6 cut(s)	56, 63, 118, 176, 217, 262
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	209
FaeI	CATG	1 cut(s)	128
FaiI	YATR	3 cut(s)	126, 180, 265
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	124
FokI	GGATG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	56, 262
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	128
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	74, 147, 159
HpyAV	CCTTC	2 cut(s)	141, 166
HpyCH4V	TGCA	3 cut(s)	28, 89, 122
Hsp92II	CATG	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	59, 90, 132, 172, 227, 237
LweI	GCATC	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	209
MboII	GAAGA	2 cut(s)	199, 242
MluCI	AATT	4 cut(s)	12, 47, 142, 191
MnlI	CCTC	3 cut(s)	67, 228, 252
MroI	TCCGGA	1 cut(s)	158
MseI	TTAA	2 cut(s)	168, 222
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	1 cut(s)	159
NlaIII	CATG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	58
PciI	ACATGT	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	76
PspEI	GGTNACC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	168, 222
Sau96I	GGNCC	1 cut(s)	76
SetI	ASST	3 cut(s)	81, 211, 219
SfaNI	GCATC	1 cut(s)	41
Sfr274I	CTCGAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	12, 47, 142, 191
TaqI	TCGA	2 cut(s)	59, 257
TasI	AATT	4 cut(s)	12, 47, 142, 191
Tru1I	TTAA	2 cut(s)	168, 222
Tru9I	TTAA	2 cut(s)	168, 222
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.