Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

11790486 .. 11790755

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

89

Amino Acids

9.7

Weight (kDa)

6.25

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	8 - 83	6.2e-06	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	63
AfeI	AGCGCT	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	85, 182
AluBI	AGCT	2 cut(s)	80, 261
AluI	AGCT	2 cut(s)	80, 261
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	161, 203, 221
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	3 cut(s)	65, 99, 203
AsuHPI	GGTGA	1 cut(s)	110
AsuNHI	GCTAGC	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	173, 215, 233
BfaI	CTAG	2 cut(s)	44, 138
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	2 cut(s)	66, 100
BisI	GCNGC	3 cut(s)	162, 204, 222
BlsI	GCNGC	3 cut(s)	163, 205, 223
BmiI	GGNNCC	1 cut(s)	64
BmtI	GCTAGC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	173, 215, 233
BshNI	GGYRCC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	14
BspQI	GCTCTTC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	6
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	139
BstH2I	RGCGCY	2 cut(s)	66, 100
BstHHI	GCGC	3 cut(s)	65, 99, 203
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 221
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	173, 215, 233
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	3 cut(s)	65, 99, 203
CviJI	RGCY	3 cut(s)	80, 141, 261
CviKI_1	RGCY	3 cut(s)	80, 141, 261
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47III	AGCGCT	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaiI	YATR	2 cut(s)	153, 233
Fnu4HI	GCNGC	3 cut(s)	162, 204, 222
Fsp4HI	GCNGC	3 cut(s)	162, 204, 222
FspBI	CTAG	2 cut(s)	44, 138
FspI	TGCGCA	1 cut(s)	202
GlaI	GCGC	3 cut(s)	64, 98, 202
GluI	GCNGC	3 cut(s)	162, 204, 222
HaeII	RGCGCY	2 cut(s)	66, 100
HhaI	GCGC	3 cut(s)	65, 99, 203
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	3 cut(s)	63, 97, 201
HinP1I	GCGC	3 cut(s)	63, 97, 201
HinfI	GANTC	2 cut(s)	50, 178
HphI	GGTGA	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	161, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 221
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	3 cut(s)	63, 97, 201
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	6
LguI	GCTCTTC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	45, 234, 249
Lsp1109I	GCAGC	3 cut(s)	173, 215, 233
MaeI	CTAG	2 cut(s)	44, 138
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	101, 104
MluCI	AATT	2 cut(s)	112, 195
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	131, 226
MwoI	GCNNNNNNNGC	2 cut(s)	212, 221
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	1 cut(s)	6
NheI	GCTAGC	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	163, 205, 223
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	87
SatI	GCNGC	3 cut(s)	162, 204, 222
Sau3AI	GATC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	59
SetI	ASST	3 cut(s)	82, 123, 263
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	64
SgeI	CNNG	7 cut(s)	34, 56, 72, 115, 150, 224, 261
Sse9I	AATT	2 cut(s)	112, 195
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	44, 138
TaaI	ACNGT	1 cut(s)	186
TasI	AATT	2 cut(s)	112, 195
TfiI	GAWTC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	161, 203, 221
TspDTI	ATGAA	2 cut(s)	102, 140
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	2 cut(s)	44, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.