Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

67540337 .. 67541427

Gene Structure 1091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAAGAGAATTTTTCAAATCCATACTGAGAAATATAAATTTAGAGGTCAGACCTAGTGAAAAGGTGGCTATATGTGGAGAATTTGGCTCAGGCAAATCAAAGCCTTCTAGCTGCAATTCTTGGAGAAATTCCAAATGTGCAAGGAAATGGGTGACTCTAAGTGGATGTCAGAAGCAGCAGATCCAACTTGCACGCGCTCTCTATCAAAATGCTGATATCTATCTGTTAGATGATCCATTTAGTTTGATGTTGGATGGGGAGATCCTACAAGCAGCTCCTTATTATCATTTAATGGCCTCGAGCCAAAAATTTCAGGACCTTGTTAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTTCAGATGTCACTTCTGCTCAAAACTCTGGAATATCATCTAGAGAGATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

8.94

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	42 - 81	1.7e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AclWI	GGATC	3 cut(s)	178, 230, 259
AcsI	RAATTY	5 cut(s)	11, 40, 83, 130, 311
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	2 cut(s)	114, 278
AluI	AGCT	2 cut(s)	114, 278
AlwI	GGATC	3 cut(s)	178, 230, 259
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	114, 178, 275
ApoI	RAATTY	5 cut(s)	11, 40, 83, 130, 311
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	101, 190, 287
BccI	CCATC	1 cut(s)	251
BfaI	CTAG	3 cut(s)	57, 111, 402
BisI	GCNGC	3 cut(s)	115, 179, 276
BlsI	GCNGC	3 cut(s)	116, 180, 277
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	222
BseGI	GGATG	2 cut(s)	173, 262
BseJI	GATNNNNATC	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	20, 105
BseXI	GCAGC	3 cut(s)	101, 190, 287
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	301
BsnI	GGCC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	183, 235, 264
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	21, 104
BspFNI	CGCG	1 cut(s)	198
BspPI	GGATC	3 cut(s)	178, 230, 259
BssMI	GATC	3 cut(s)	183, 235, 264
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	3 cut(s)	29, 91, 161
BstF5I	GGATG	2 cut(s)	173, 262
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	186, 238, 267
BstMBI	GATC	3 cut(s)	183, 235, 264
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	101, 190, 287
BstX2I	RGATCY	2 cut(s)	183, 264
BstYI	RGATCY	2 cut(s)	183, 264
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	173, 262
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	319
CviJI	RGCY	8 cut(s)	71, 90, 106, 114, 278, 299, 306, 361
CviKI_1	RGCY	8 cut(s)	71, 90, 106, 114, 278, 299, 306, 361
DdeI	CTNAG	3 cut(s)	29, 91, 161
DpnI	GATC	3 cut(s)	185, 237, 266
DpnII	GATC	3 cut(s)	183, 235, 264
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	220
FaiI	YATR	4 cut(s)	26, 38, 74, 76
Fnu4HI	GCNGC	3 cut(s)	115, 179, 276
FokI	GGATG	2 cut(s)	180, 269
Fsp4HI	GCNGC	3 cut(s)	115, 179, 276
FspBI	CTAG	3 cut(s)	57, 111, 402
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	115, 179, 276
HaeIII	GGCC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	53, 174, 355, 367
Hpy188III	TCNNGA	3 cut(s)	317, 390, 402
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	117, 143, 194, 332
HpyF3I	CTNAG	3 cut(s)	29, 91, 161
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	183, 235, 264
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	78, 302, 333, 375
Lsp1109I	GCAGC	3 cut(s)	101, 190, 287
MaeI	CTAG	3 cut(s)	57, 111, 402
MaeIII	GTNAC	2 cut(s)	154, 370
MalI	GATC	3 cut(s)	185, 237, 266
MboI	GATC	3 cut(s)	183, 235, 264
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	2 cut(s)	183, 264
MluCI	AATT	6 cut(s)	11, 40, 83, 118, 130, 311
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	211, 234
MnlI	CCTC	2 cut(s)	40, 310
MseI	TTAA	3 cut(s)	293, 327, 411
MvnI	CGCG	1 cut(s)	198
NdeII	GATC	3 cut(s)	183, 235, 264
NmuCI	GTSAC	2 cut(s)	154, 370
PaeR7I	CTCGAG	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	116, 180, 277
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	319
PspPPI	RGGWCCY	1 cut(s)	319
PspXI	VCTCGAGB	1 cut(s)	301
PsuI	RGATCY	2 cut(s)	183, 264
SaqAI	TTAA	3 cut(s)	293, 327, 411
SatI	GCNGC	3 cut(s)	115, 179, 276
Sau3AI	GATC	3 cut(s)	183, 235, 264
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	151
SetI	ASST	6 cut(s)	51, 58, 69, 116, 280, 324
Sfr274I	CTCGAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	6 cut(s)	11, 40, 83, 118, 130, 311
SspMI	CTAG	3 cut(s)	57, 111, 402
TaqI	TCGA	1 cut(s)	302
TasI	AATT	6 cut(s)	11, 40, 83, 118, 130, 311
Tru1I	TTAA	3 cut(s)	293, 327, 411
Tru9I	TTAA	3 cut(s)	293, 327, 411
TseFI	GTSAC	2 cut(s)	154, 370
TseI	GCWGC	3 cut(s)	114, 178, 275
Tsp45I	GTSAC	2 cut(s)	154, 370
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	5 cut(s)	11, 40, 83, 130, 311
XbaI	TCTAGA	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	301
XspI	CTAG	3 cut(s)	57, 111, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.