Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

26167407 .. 26178270

Gene Structure 10864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCTACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCGTTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGCATCACCGACCATGACACAGAACTCATTCGAGTCCGGTGGGGCTGGAACCCAATGACCATCATGAAGAGAAATTTAAAGGCCTCCGATGTCGTTGGATCTCAAAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

7.84

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 108	9.2e-08	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	71, 427
AcsI	RAATTY	2 cut(s)	169, 394
AcyI	GRCGYC	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	142, 239
AluBI	AGCT	3 cut(s)	22, 137, 318
AluI	AGCT	3 cut(s)	22, 137, 318
AlwI	GGATC	2 cut(s)	71, 427
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	155
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	3 cut(s)	218, 260, 278
ApoI	RAATTY	2 cut(s)	169, 394
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	122, 156, 260
AsuHPI	GGTGA	2 cut(s)	167, 319
AsuNHI	GCTAGC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	230, 272, 290
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	101, 195
BfmI	CTRYAG	2 cut(s)	23, 276
BfoI	RGCGCY	2 cut(s)	123, 157
BisI	GCNGC	3 cut(s)	219, 261, 279
BlsI	GCNGC	3 cut(s)	220, 262, 280
BmiI	GGNNCC	2 cut(s)	121, 371
BmsI	GCATC	1 cut(s)	333
BmtI	GCTAGC	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	230, 272, 290
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	358
BsnI	GGCC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	63, 419
BspANI	GGCC	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	121, 371
BspMAI	CTGCAG	1 cut(s)	280
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	2 cut(s)	71, 427
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	63, 419
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	144, 383
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	196
BstH2I	RGCGCY	2 cut(s)	123, 157
BstHHI	GCGC	3 cut(s)	122, 156, 260
BstKTI	GATC	2 cut(s)	66, 422
BstMBI	GATC	2 cut(s)	63, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstSFI	CTRYAG	2 cut(s)	23, 276
BstV1I	GCAGC	3 cut(s)	230, 272, 290
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	3 cut(s)	122, 156, 260
CviAII	CATG	2 cut(s)	335, 385
CviJI	RGCY	6 cut(s)	22, 137, 198, 318, 366, 404
CviKI_1	RGCY	6 cut(s)	22, 137, 198, 318, 366, 404
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	2 cut(s)	65, 421
DpnII	GATC	2 cut(s)	63, 419
DraI	TTTAAA	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	144, 383
EarI	CTCTTC	2 cut(s)	144, 383
Eco147I	AGGCCT	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
FaeI	CATG	2 cut(s)	338, 388
FaiI	YATR	4 cut(s)	210, 290, 336, 386
FatI	CATG	2 cut(s)	334, 384
Fnu4HI	GCNGC	3 cut(s)	219, 261, 279
Fsp4HI	GCNGC	3 cut(s)	219, 261, 279
FspBI	CTAG	2 cut(s)	101, 195
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	3 cut(s)	121, 155, 259
GluI	GCNGC	3 cut(s)	219, 261, 279
HaeII	RGCGCY	2 cut(s)	123, 157
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	3 cut(s)	122, 156, 260
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	338, 388
Hin6I	GCGC	3 cut(s)	120, 154, 258
HinP1I	GCGC	3 cut(s)	120, 154, 258
HinfI	GANTC	3 cut(s)	107, 235, 354
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	2 cut(s)	167, 319
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	47, 218, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	338, 388
HspAI	GCGC	3 cut(s)	120, 154, 258
KasI	GGCGCC	1 cut(s)	119
Kzo9I	GATC	2 cut(s)	63, 419
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	102, 291, 306, 352, 371
Lsp1109I	GCAGC	3 cut(s)	230, 272, 290
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	101, 195
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	65, 421
MboI	GATC	2 cut(s)	63, 419
MboII	GAAGA	3 cut(s)	158, 161, 400
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	4 cut(s)	15, 169, 252, 394
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	2 cut(s)	116, 363
MmeI	TCCRAC	2 cut(s)	326, 397
MnlI	CCTC	4 cut(s)	54, 188, 283, 415
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	2 cut(s)	63, 419
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	338, 388
NlaIV	GGNNCC	2 cut(s)	121, 371
NsbI	TGCGCA	1 cut(s)	259
PagI	TCATGA	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	220, 262, 280
PleI	GAGTC	2 cut(s)	115, 362
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	2 cut(s)	115, 362
PspN4I	GGNNCC	2 cut(s)	121, 371
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	3 cut(s)	219, 261, 279
Sau3AI	GATC	2 cut(s)	63, 419
SchI	GAGTC	2 cut(s)	116, 363
SetI	ASST	4 cut(s)	24, 139, 180, 320
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	2 cut(s)	23, 276
SfoI	GGCGCC	1 cut(s)	121
Sse9I	AATT	4 cut(s)	15, 169, 252, 394
SseBI	AGGCCT	1 cut(s)	404
SspDI	GGCGCC	1 cut(s)	119
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	2 cut(s)	101, 195
StuI	AGGCCT	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	15, 169, 252, 394
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseI	GCWGC	3 cut(s)	218, 260, 278
TspDTI	ATGAA	3 cut(s)	159, 197, 401
XapI	RAATTY	2 cut(s)	169, 394
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	101, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.