Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

47764140 .. 47766463

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATTGCAATTGATCGTGGTTTACCCGTCGATTGGATTTTCTGCAACATTTATTTTGCTGTTCAGATCCCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAAGTCTTTATTTTCTCAGCTACTAAACTCTCTATTTCGCGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGGTTTCATCTGATCTAAGTATCGTAGATCTTGATATTCCATTCAGCCTGGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTAGAGTACTAGCTGCTGTTACATGGCAAGTCCTGTTTGTTTCCATACCAATGGTCTTTCTGGCAATTCAGCTACAGAAATATTACTTTTCTACTGCAAAGGAGCTGATGAGGATCAATGGAACAACTAAGTCTTTTGTAGCAAACCATCTAGCAGAGTCTGTATCAGGAGCCATTACAATAAGAGCTTTCAATGAAGAAGACCGCTTCTTGGCAAAGAATTTTCACCTCATTGACATAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTAGCGCAGCAGTTCTCGCCTCTGCAACACTCTGTATGGTTTTTCTTCCAACTGGAACTTTTAGCTCTGGTAAAACTGGTGTCTTTAGCATTGAAAACCAATCGTTTATGTTGAAGAAGAATAACAGCATTATGTTGGAGAAGAAGGCAGATGAAAAGGTGATACTGCTTTCAGAAGAACATAAGAGAGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAACTTGACGTCAAAACTGCATTGGCGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTGAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATCGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

382

Amino Acids

42.86

Weight (kDa)

5.96

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	11 - 233	7.6e-26	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	858
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	2 cut(s)	93, 434
AcsI	RAATTY	2 cut(s)	532, 1044
AcyI	GRCGYC	1 cut(s)	855
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	65, 523
AgsI	TTSAA	5 cut(s)	505, 602, 710, 730, 836
AjnI	CCWGG	2 cut(s)	270, 1095
AluBI	AGCT	9 cut(s)	33, 154, 290, 326, 385, 418, 500, 681, 1055
AluI	AGCT	9 cut(s)	33, 154, 290, 326, 385, 418, 500, 681, 1055
AlwI	GGATC	2 cut(s)	93, 434
AlwNI	CAGNNNCTG	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	5, 326, 581, 623
ApoI	RAATTY	2 cut(s)	532, 1044
AspLEI	GCGC	3 cut(s)	176, 623, 874
AsuHPI	GGTGA	2 cut(s)	530, 787
AsuNHI	GCTAGC	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	313, 593, 635
BccI	CCATC	2 cut(s)	468, 923
BciT130I	CCWGG	2 cut(s)	272, 1097
BciVI	GTATCC	1 cut(s)	207
BclI	TGATCA	1 cut(s)	1068
BfaI	CTAG	4 cut(s)	323, 464, 558, 875
BfmI	CTRYAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	875
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	4 cut(s)	6, 327, 582, 624
BlsI	GCNGC	4 cut(s)	7, 328, 583, 625
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	272, 1097
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	2 cut(s)	272, 1097
BmsI	GCATC	1 cut(s)	140
BmtI	GCTAGC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	855
BsaJI	CCNNGG	1 cut(s)	1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 523
Bse1I	ACTGG	2 cut(s)	673, 697
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	272, 1097
BseDI	CCNNGG	1 cut(s)	1002
BseJI	GATNNNNATC	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	65, 523
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	164, 1070
BseNI	ACTGG	2 cut(s)	673, 697
BseXI	GCAGC	3 cut(s)	313, 593, 635
Bsh1236I	CGCG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	65, 523
Bsp143I	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
Bsp19I	CCATGG	1 cut(s)	1002
BspACI	CCGC	1 cut(s)	517
BspCNI	CTCAG	2 cut(s)	163, 1069
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	93, 434
BsrDI	GCAATG	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	673, 697
BssECI	CCNNGG	1 cut(s)	1002
BssMI	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
BssNI	GRCGYC	1 cut(s)	855
BssT1I	CCWWGG	1 cut(s)	1002
Bst2UI	CCWGG	2 cut(s)	272, 1097
Bst4CI	ACNGT	4 cut(s)	112, 606, 975, 1080
Bst6I	CTCTTC	2 cut(s)	984, 1109
BstACI	GRCGYC	1 cut(s)	855
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	6 cut(s)	150, 218, 239, 314, 441, 1056
BstDSI	CCRYGG	1 cut(s)	1002
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	3 cut(s)	176, 623, 874
BstKTI	GATC	6 cut(s)	48, 101, 238, 253, 429, 1071
BstMBI	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 632
BstNI	CCWGG	2 cut(s)	272, 1097
BstSCI	CCNGG	2 cut(s)	270, 1095
BstSFI	CTRYAG	1 cut(s)	386
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	313, 593, 635
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	98, 250
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	2 cut(s)	98, 250
BsuI	GTATCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	1002
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	3 cut(s)	176, 623, 874
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	5 cut(s)	181, 336, 923, 1003, 1109
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	6 cut(s)	150, 218, 239, 314, 441, 1056
DpnI	GATC	6 cut(s)	47, 100, 237, 252, 428, 1070
DpnII	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
Eam1104I	CTCTTC	2 cut(s)	984, 1109
EarI	CTCTTC	2 cut(s)	984, 1109
Eco130I	CCWWGG	1 cut(s)	1002
EcoRII	CCWGG	2 cut(s)	270, 1095
EcoT14I	CCWWGG	1 cut(s)	1002
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	1002
FaeI	CATG	5 cut(s)	184, 339, 926, 1006, 1112
FalI	AAGNNNNNCTT	2 cut(s)	883, 915
FatI	CATG	5 cut(s)	180, 335, 922, 1002, 1108
FbaI	TGATCA	1 cut(s)	1068
Fnu4HI	GCNGC	4 cut(s)	6, 327, 582, 624
Fsp4HI	GCNGC	4 cut(s)	6, 327, 582, 624
FspBI	CTAG	4 cut(s)	323, 464, 558, 875
GlaI	GCGC	3 cut(s)	175, 622, 873
GluI	GCNGC	4 cut(s)	6, 327, 582, 624
HaeII	RGCGCY	1 cut(s)	875
HhaI	GCGC	3 cut(s)	176, 623, 874
Hin1I	GRCGYC	1 cut(s)	855
Hin1II	CATG	5 cut(s)	184, 339, 926, 1006, 1112
Hin6I	GCGC	3 cut(s)	174, 621, 872
HinP1I	GCGC	3 cut(s)	174, 621, 872
HincII	GTYRAC	2 cut(s)	108, 1129
HindII	GTYRAC	2 cut(s)	108, 1129
HinfI	GANTC	4 cut(s)	194, 470, 598, 1085
HpaI	GTTAAC	1 cut(s)	108
HphI	GGTGA	2 cut(s)	530, 787
Hpy166II	GTNNAC	3 cut(s)	55, 108, 1129
Hpy188I	TCNGA	4 cut(s)	98, 235, 790, 1059
Hpy188III	TCNNGA	4 cut(s)	125, 254, 480, 1049
Hpy8I	GTNNAC	3 cut(s)	55, 108, 1129
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	4 cut(s)	204, 754, 979, 1054
HpyCH4III	ACNGT	4 cut(s)	112, 606, 975, 1080
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	8 cut(s)	40, 77, 410, 581, 641, 866, 922, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 632
HpyF3I	CTNAG	6 cut(s)	150, 218, 239, 314, 441, 1056
HpySE526I	ACGT	1 cut(s)	855
Hsp92I	GRCGYC	1 cut(s)	855
Hsp92II	CATG	5 cut(s)	184, 339, 926, 1006, 1112
HspAI	GCGC	3 cut(s)	174, 621, 872
Ksp22I	TGATCA	1 cut(s)	1068
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
LmnI	GCTCC	3 cut(s)	287, 415, 482
Lsp1109I	GCAGC	3 cut(s)	313, 593, 635
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	4 cut(s)	323, 464, 558, 875
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	6 cut(s)	47, 100, 237, 252, 428, 1070
MboI	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	2 cut(s)	98, 250
MluCI	AATT	7 cut(s)	41, 378, 532, 615, 815, 836, 1044
MlyI	GAGTC	2 cut(s)	188, 479
MmeI	TCCRAC	2 cut(s)	689, 732
MnlI	CCTC	8 cut(s)	121, 213, 417, 551, 646, 887, 961, 985
Mph1103I	ATGCAT	1 cut(s)	924
MseI	TTAA	3 cut(s)	107, 908, 977
MslI	CAYNNNNRTG	2 cut(s)	362, 927
MspR9I	CCNGG	2 cut(s)	272, 1097
MunI	CAATTG	1 cut(s)	41
MvaI	CCWGG	2 cut(s)	272, 1097
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	287, 632
NcoI	CCATGG	1 cut(s)	1002
NdeII	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	5 cut(s)	184, 339, 926, 1006, 1112
NlaIV	GGNNCC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	598, 1085
PkrI	GCNGC	4 cut(s)	7, 328, 583, 625
PleI	GAGTC	2 cut(s)	188, 478
PpsI	GAGTC	2 cut(s)	188, 478
Psp6I	CCWGG	2 cut(s)	270, 1095
PspGI	CCWGG	2 cut(s)	270, 1095
PspN4I	GGNNCC	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	98, 250
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	362, 927
SaqAI	TTAA	3 cut(s)	107, 908, 977
SatI	GCNGC	4 cut(s)	6, 327, 582, 624
Sau3AI	GATC	6 cut(s)	45, 98, 235, 250, 426, 1068
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	2 cut(s)	188, 479
ScrFI	CCNGG	2 cut(s)	272, 1097
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	362, 927
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	7 cut(s)	41, 378, 532, 615, 815, 836, 1044
SsiI	CCGC	1 cut(s)	517
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	4 cut(s)	323, 464, 558, 875
StyD4I	CCNGG	2 cut(s)	270, 1095
StyI	CCWWGG	1 cut(s)	1002
TaaI	ACNGT	4 cut(s)	112, 606, 975, 1080
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	1 cut(s)	62
TasI	AATT	7 cut(s)	41, 378, 532, 615, 815, 836, 1044
TatI	WGTACW	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	598, 1085
Tru1I	TTAA	3 cut(s)	107, 908, 977
Tru9I	TTAA	3 cut(s)	107, 908, 977
TseI	GCWGC	4 cut(s)	5, 326, 581, 623
XapI	RAATTY	2 cut(s)	532, 1044
XspI	CTAG	4 cut(s)	323, 464, 558, 875
ZraI	GACGTC	1 cut(s)	856
ZrmI	AGTACT	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.