Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

58265333 .. 58297050

Gene Structure 31718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG443400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATCACAATTGGTCTTAGTCTACTTGTCGATTGGATTTTCTGCAACATTTATTTTACTGTTCAGATCTCTGTTAACAGTTGGTTTGGGTCTTGAGGCATCAAGGGCTTTATTTTCTCAGCTACTAAACTCTCTATTTCATGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGCTTTCATCTGATCCAATCCTGTTTGTTTCCATACCAATGGTCTTTCTGCCAATTCAGCTACAGAAATATTACTTTTCCACTACAAAGGAGTTGATGAGGATCAATGGAACAACCAAATCTTTTGTAGCAAATCATCTAGTAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTTTGATTCATCAAGAAGCAATACCACGCACACTGGAAAAACCTCAAATCAACCAAGAATGAGACACGAGAAGAAGCCTTTCCCCCTCAACCACTCAAAACCCAGCGCCACTTCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

232

Amino Acids

25.68

Weight (kDa)

9.43

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	9 - 79	1.1e-10	ABC transporter transmembrane region
ABC_membrane	PF00664	83 - 194	9.1e-09	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	230, 332
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	381
AfeI	AGCGCT	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	403, 500
AluBI	AGCT	5 cut(s)	33, 154, 283, 398, 579
AluI	AGCT	5 cut(s)	33, 154, 283, 398, 579
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	230, 332
Aor51HI	AGCGCT	1 cut(s)	416
ApeKI	GCWGC	4 cut(s)	5, 479, 521, 539
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	4 cut(s)	383, 417, 521, 686
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	644
BbvI	GCAGC	3 cut(s)	491, 533, 551
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	2 cut(s)	362, 456
BfmI	CTRYAG	2 cut(s)	284, 537
BfoI	RGCGCY	3 cut(s)	384, 418, 687
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	4 cut(s)	6, 480, 522, 540
BlsI	GCNGC	4 cut(s)	7, 481, 523, 541
BmiI	GGNNCC	1 cut(s)	382
BmsI	GCATC	1 cut(s)	140
BmtI	GCTAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	571, 616
Bse8I	GATNNNNATC	1 cut(s)	323
BseJI	GATNNNNATC	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	571, 616
BseXI	GCAGC	3 cut(s)	491, 533, 551
BseYI	CCCAGC	1 cut(s)	680
BshNI	GGYRCC	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	634
Bsp143I	GATC	3 cut(s)	98, 235, 324
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	382
BspMAI	CTGCAG	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	230, 332
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	571, 616
BssMI	GATC	3 cut(s)	98, 235, 324
BssNI	GRCGYC	1 cut(s)	381
BssSI	CACGAG	1 cut(s)	644
Bst2BI	CACGAG	1 cut(s)	644
Bst4CI	ACNGT	3 cut(s)	93, 112, 504
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	3 cut(s)	49, 150, 218
BstH2I	RGCGCY	3 cut(s)	384, 418, 687
BstHHI	GCGC	4 cut(s)	383, 417, 521, 686
BstKTI	GATC	3 cut(s)	101, 238, 327
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	3 cut(s)	98, 235, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 280, 530, 539
BstSFI	CTRYAG	2 cut(s)	284, 537
BstV1I	GCAGC	3 cut(s)	491, 533, 551
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	4 cut(s)	383, 417, 521, 686
CviAII	CATG	2 cut(s)	173, 181
DdeI	CTNAG	3 cut(s)	49, 150, 218
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	3 cut(s)	100, 237, 326
DpnII	GATC	3 cut(s)	98, 235, 324
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco47III	AGCGCT	1 cut(s)	416
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
FaeI	CATG	2 cut(s)	176, 184
FaiI	YATR	6 cut(s)	174, 182, 192, 257, 471, 551
FatI	CATG	2 cut(s)	172, 180
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	6, 480, 522, 540
Fsp4HI	GCNGC	4 cut(s)	6, 480, 522, 540
FspBI	CTAG	2 cut(s)	362, 456
FspI	TGCGCA	1 cut(s)	520
GlaI	GCGC	4 cut(s)	382, 416, 520, 685
GluI	GCNGC	4 cut(s)	6, 480, 522, 540
GsaI	CCCAGC	1 cut(s)	684
HaeII	RGCGCY	3 cut(s)	384, 418, 687
HhaI	GCGC	4 cut(s)	383, 417, 521, 686
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	176, 184
Hin6I	GCGC	4 cut(s)	381, 415, 519, 684
HinP1I	GCGC	4 cut(s)	381, 415, 519, 684
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	4 cut(s)	194, 368, 496, 584
HpaI	GTTAAC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	55, 108
Hpy188I	TCNGA	2 cut(s)	98, 235
Hpy188III	TCNNGA	2 cut(s)	125, 591
Hpy8I	GTNNAC	2 cut(s)	55, 108
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	3 cut(s)	93, 112, 504
HpyCH4V	TGCA	4 cut(s)	77, 176, 479, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 280, 530, 539
HpyF3I	CTNAG	3 cut(s)	49, 150, 218
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	176, 184
HspAI	GCGC	4 cut(s)	381, 415, 519, 684
KasI	GGCGCC	1 cut(s)	380
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	98, 235, 324
LguI	GCTCTTC	1 cut(s)	405
LpnPI	CCDG	6 cut(s)	191, 257, 363, 552, 597, 694
Lsp1109I	GCAGC	3 cut(s)	491, 533, 551
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	362, 456
MalI	GATC	3 cut(s)	100, 237, 326
MboI	GATC	3 cut(s)	98, 235, 324
MboII	GAAGA	4 cut(s)	419, 422, 661, 684
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	4 cut(s)	41, 276, 430, 513
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	188, 377
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	7 cut(s)	121, 213, 315, 449, 544, 631, 674
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	137, 280, 530, 539
NarI	GGCGCC	1 cut(s)	381
NdeII	GATC	3 cut(s)	98, 235, 324
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	176, 184
NlaIV	GGNNCC	1 cut(s)	382
NsbI	TGCGCA	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	2 cut(s)	496, 584
PkrI	GCNGC	4 cut(s)	7, 481, 523, 541
PleI	GAGTC	2 cut(s)	188, 376
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	2 cut(s)	188, 376
PspFI	CCCAGC	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	6, 480, 522, 540
Sau3AI	GATC	3 cut(s)	98, 235, 324
SchI	GAGTC	2 cut(s)	188, 377
SetI	ASST	7 cut(s)	35, 156, 285, 400, 441, 581, 623
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	2 cut(s)	284, 537
SfoI	GGCGCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	41, 276, 430, 513
SspDI	GGCGCC	1 cut(s)	380
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	2 cut(s)	362, 456
TaaI	ACNGT	3 cut(s)	93, 112, 504
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	41, 276, 430, 513
TfiI	GAWTC	2 cut(s)	496, 584
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	616
TseI	GCWGC	4 cut(s)	5, 479, 521, 539
TspDTI	ATGAA	5 cut(s)	161, 219, 420, 458, 576
TspRI	CASTG	1 cut(s)	616
XapI	RAATTY	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	2 cut(s)	362, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.