Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

63912302 .. 63914540

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCTAATGTTGATAATCCCAATGTTAGCTCATCGCAATTGATCTTGGTCTACCTGTCGATTGGATTTTCTGCAACATTTATTTTACTGTTCAGATCTCTGTTAACAGTTGTTTTGGGTCTTGAGGCATCAAGGGCTTTATTTTCTCAGCTACCAAACTCTCTATTTCATGCACCCATGTCTTTCTATGACTCAACGCCTCTGGGAAGGATACTAAGTCGGCTTTCATCTGATCCAAGTATCGTAGATCTTGATATTCCATTCAGCCTTGTCTTTGCTTGTGGAGCTACCATAAATGCTTACTCCAATCTTGGAGTACTAGCTCCTGTTACATGGCCAGTCCTGTTTATTTCCATACCAATTGTCTTTCTGGCAATTCAGCTACAGGTTCTTGAGAAGTGTCAGCTTCAGGAGGCTGTTCAAGAAAATGAAGGCGGCTTAGACTCTTTAGGGAAAATAGTGGAGTATGATGAGCCAACGAAACTAATGAAAAGTAAAAGCTCACTATTCGGGCAGCTTGTCAAGGAATACTGGTCTCATCTTCAGTCTGCAGAATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

188

Amino Acids

20.58

Weight (kDa)

4.9

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	7 - 156	9.9e-16	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	338
AcuI	CTGAAG	2 cut(s)	395, 530
AfaI	GTAC	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	425
AluBI	AGCT	8 cut(s)	33, 154, 290, 326, 385, 409, 504, 520
AluI	AGCT	8 cut(s)	33, 154, 290, 326, 385, 409, 504, 520
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	5, 517
BalI	TGGCCA	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	529
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	2 cut(s)	386, 552
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	2 cut(s)	98, 250
BisI	GCNGC	3 cut(s)	6, 439, 518
BlsI	GCNGC	3 cut(s)	7, 440, 519
BmcAI	AGTACT	1 cut(s)	321
BmsI	GCATC	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	146, 416
BsaI	GGTCTC	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	341, 539
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	341, 539
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	543
BsnI	GGCC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	45, 98, 235, 250
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	341, 539
BssMI	GATC	4 cut(s)	45, 98, 235, 250
Bst4CI	ACNGT	2 cut(s)	93, 112
BstDEI	CTNAG	3 cut(s)	150, 218, 442
BstKTI	GATC	4 cut(s)	48, 101, 238, 253
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	4 cut(s)	45, 98, 235, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 287
BstSFI	CTRYAG	2 cut(s)	386, 552
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	2 cut(s)	98, 250
BstYI	RGATCY	2 cut(s)	98, 250
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	3 cut(s)	173, 181, 336
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	150, 218, 442
DpnI	GATC	4 cut(s)	47, 100, 237, 252
DpnII	GATC	4 cut(s)	45, 98, 235, 250
EaeI	YGGCCR	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	543
Eco57I	CTGAAG	2 cut(s)	395, 530
FaeI	CATG	3 cut(s)	176, 184, 339
FaiI	YATR	7 cut(s)	174, 182, 192, 296, 337, 359, 471
FatI	CATG	3 cut(s)	172, 180, 335
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	6, 439, 518
Fsp4HI	GCNGC	3 cut(s)	6, 439, 518
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	3 cut(s)	6, 439, 518
HaeIII	GGCC	1 cut(s)	340
Hin1II	CATG	3 cut(s)	176, 184, 339
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	194, 446, 557
HpaI	GTTAAC	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	55, 108
Hpy188I	TCNGA	2 cut(s)	98, 235
Hpy188III	TCNNGA	5 cut(s)	125, 254, 395, 413, 425
Hpy8I	GTNNAC	2 cut(s)	55, 108
HpyAV	CCTTC	2 cut(s)	204, 428
HpyCH4III	ACNGT	2 cut(s)	93, 112
HpyCH4V	TGCA	3 cut(s)	77, 176, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 287
HpyF3I	CTNAG	3 cut(s)	150, 218, 442
Hsp92II	CATG	3 cut(s)	176, 184, 339
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	45, 98, 235, 250
LmnI	GCTCC	2 cut(s)	287, 331
LpnPI	CCDG	9 cut(s)	71, 191, 342, 354, 359, 359, 374, 398, 520
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	4 cut(s)	47, 100, 237, 252
MboI	GATC	4 cut(s)	45, 98, 235, 250
MboII	GAAGA	1 cut(s)	536
MfeI	CAATTG	2 cut(s)	41, 363
MflI	RGATCY	2 cut(s)	98, 250
MlsI	TGGCCA	1 cut(s)	340
MluCI	AATT	3 cut(s)	41, 363, 378
MluNI	TGGCCA	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	188, 440
MnlI	CCTC	3 cut(s)	121, 213, 409
Mox20I	TGGCCA	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	340
MseI	TTAA	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	340
MunI	CAATTG	2 cut(s)	41, 363
MwoI	GCNNNNNNNGC	2 cut(s)	137, 287
NdeII	GATC	4 cut(s)	45, 98, 235, 250
NlaIII	CATG	3 cut(s)	176, 184, 339
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	3 cut(s)	7, 440, 519
PleI	GAGTC	2 cut(s)	188, 440
PpsI	GAGTC	2 cut(s)	188, 440
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	2 cut(s)	98, 250
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	3 cut(s)	6, 439, 518
Sau3AI	GATC	4 cut(s)	45, 98, 235, 250
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	2 cut(s)	188, 440
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	2 cut(s)	386, 552
SmlI	CTYRAG	2 cut(s)	125, 395
SmoI	CTYRAG	2 cut(s)	125, 395
Sse9I	AATT	3 cut(s)	41, 363, 378
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	93, 112
TaqI	TCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	41, 363, 378
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	2 cut(s)	5, 517
TspDTI	ATGAA	4 cut(s)	161, 219, 447, 506
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.