Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

37206068 .. 37207944

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG294900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCTCGAGCCAAAAATTTCAGGACCTTGTTAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTTCAGATGTCACTTCTGCTCAAAACTCTGGAATATCATCTAAAGAGATTAAGAAGACTTACGTGGAGAAGCCACTGAAAGCAAGTAAAGGTGATCAACTAATTAAACTAGAAGAGAGAGAGAGACAGGAGACACAGATCTCTTTAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCTTTGTTTTCACAATTACTAAACTCCCTTTTTCGTGCAGCCATATCATTCTATGACTCAACATCACTGGGAAGGATACTTAGTCGAGTTTCATCTGATCTGAGCATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGTAGCTACCATGAATTATGAAAGTATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

140

Amino Acids

15.39

Weight (kDa)

6.59

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	72 - 116	8.5e-07	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	17
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	3 cut(s)	184, 191, 227
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	184, 191, 227
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	312
BglII	AGATCT	2 cut(s)	204, 355
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	25
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	7
BsmAI	GTCTC	3 cut(s)	184, 191, 227
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	7
Bsp143I	GATC	4 cut(s)	160, 204, 340, 355
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	4 cut(s)	160, 204, 340, 355
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	323, 344
BstKTI	GATC	4 cut(s)	163, 207, 343, 358
BstMAI	GTCTC	3 cut(s)	184, 191, 227
BstMBI	GATC	4 cut(s)	160, 204, 340, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	2 cut(s)	204, 355
BstYI	RGATCY	2 cut(s)	204, 355
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	140, 308
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	6 cut(s)	5, 12, 67, 139, 284, 395
CviKI_1	RGCY	6 cut(s)	5, 12, 67, 139, 284, 395
DdeI	CTNAG	2 cut(s)	323, 344
DpnI	GATC	4 cut(s)	162, 206, 342, 357
DpnII	GATC	4 cut(s)	160, 204, 340, 355
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	25
FaeI	CATG	1 cut(s)	403
FaiI	YATR	6 cut(s)	287, 297, 377, 401, 408, 416
FatI	CATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	403
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	4 cut(s)	61, 73, 340, 345
Hpy188III	TCNNGA	4 cut(s)	23, 96, 230, 359
HpyAV	CCTTC	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	38, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	323, 344
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 204, 340, 355
LpnPI	CCDG	5 cut(s)	8, 39, 81, 179, 296
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	4 cut(s)	162, 206, 342, 357
MboI	GATC	4 cut(s)	160, 204, 340, 355
MboII	GAAGA	2 cut(s)	133, 191
MflI	RGATCY	2 cut(s)	204, 355
MluCI	AATT	4 cut(s)	17, 168, 257, 403
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	1 cut(s)	16
MseI	TTAA	3 cut(s)	33, 117, 171
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	4 cut(s)	160, 204, 340, 355
NlaIII	CATG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Ppu21I	YACGTR	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
PspXI	VCTCGAGB	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	204, 355
SaqAI	TTAA	3 cut(s)	33, 117, 171
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	160, 204, 340, 355
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	293
SetI	ASST	4 cut(s)	30, 132, 160, 397
SfaNI	GCATC	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	2 cut(s)	7, 230
SmoI	CTYRAG	2 cut(s)	7, 230
Sse9I	AATT	4 cut(s)	17, 168, 257, 403
SspMI	CTAG	1 cut(s)	176
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	8, 328
TasI	AATT	4 cut(s)	17, 168, 257, 403
Tru1I	TTAA	3 cut(s)	33, 117, 171
Tru9I	TTAA	3 cut(s)	33, 117, 171
TscAI	CASTG	2 cut(s)	147, 315
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	324, 416, 423
TspRI	CASTG	2 cut(s)	147, 315
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	7
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.