Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

64278096 .. 64278641

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTCTTTTGCGTGGAAACTTCTTTATATGACACAGTATGTCTTCCTTTCAGAAATATTACTTTTCCACACTTTTCCACTACAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGCTTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGTGCTTTCTTATGGTCTTTCATTAAACATGTCGTTGATCTATTCAATTCAAAACCGGTGCACTATAAGGAGACTCAAAACATGGATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

8.35

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	30 - 134	1.2e-06	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	156
AfeI	AGCGCT	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	399
AgeI	ACCGGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	178, 275, 417, 422
AluBI	AGCT	2 cut(s)	173, 354
AluI	AGCT	2 cut(s)	173, 354
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	191
ApaLI	GTGCAC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	254, 296, 314
ApoI	RAATTY	1 cut(s)	205
AsiGI	ACCGGT	1 cut(s)	426
AspLEI	GCGC	3 cut(s)	158, 192, 296
AsuHPI	GGTGA	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	3 cut(s)	266, 308, 326
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	2 cut(s)	137, 231
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	2 cut(s)	159, 193
BisI	GCNGC	3 cut(s)	255, 297, 315
BlsI	GCNGC	3 cut(s)	256, 298, 316
BmiI	GGNNCC	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	426
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	98
BseJI	GATNNNNATC	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	266, 308, 326
BshNI	GGYRCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	99, 408
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	316
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	426
BssMI	GATC	2 cut(s)	99, 408
BssNI	GRCGYC	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	37, 279
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	232
BstH2I	RGCGCY	2 cut(s)	159, 193
BstHHI	GCGC	3 cut(s)	158, 192, 296
BstKTI	GATC	2 cut(s)	102, 411
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	2 cut(s)	99, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 314
BstNSI	RCATGY	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	266, 308, 326
BstV2I	GAAGAC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	3 cut(s)	158, 192, 296
Cfr10I	RCCGGY	1 cut(s)	426
CspAI	ACCGGT	1 cut(s)	426
CviAII	CATG	2 cut(s)	400, 453
CviJI	RGCY	3 cut(s)	173, 234, 354
CviKI_1	RGCY	3 cut(s)	173, 234, 354
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	2 cut(s)	101, 410
DpnII	GATC	2 cut(s)	99, 408
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco47III	AGCGCT	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaeI	CATG	2 cut(s)	403, 456
FaiI	YATR	9 cut(s)	28, 30, 40, 246, 326, 384, 401, 437, 454
FatI	CATG	2 cut(s)	399, 452
Fnu4HI	GCNGC	3 cut(s)	255, 297, 315
Fsp4HI	GCNGC	3 cut(s)	255, 297, 315
FspBI	CTAG	2 cut(s)	137, 231
FspI	TGCGCA	1 cut(s)	295
GlaI	GCGC	3 cut(s)	157, 191, 295
GluI	GCNGC	3 cut(s)	255, 297, 315
HaeII	RGCGCY	2 cut(s)	159, 193
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	3 cut(s)	158, 192, 296
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	403, 456
Hin6I	GCGC	3 cut(s)	156, 190, 294
HinP1I	GCGC	3 cut(s)	156, 190, 294
HinfI	GANTC	3 cut(s)	143, 271, 444
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	432
HpyCH4III	ACNGT	2 cut(s)	37, 279
HpyCH4V	TGCA	3 cut(s)	254, 314, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 314
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	403, 456
HspAI	GCGC	3 cut(s)	156, 190, 294
KasI	GGCGCC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	99, 408
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	138, 327, 342, 440
Lsp1109I	GCAGC	3 cut(s)	266, 308, 326
MaeI	CTAG	2 cut(s)	137, 231
MalI	GATC	2 cut(s)	101, 410
MboI	GATC	2 cut(s)	99, 408
MboII	GAAGA	3 cut(s)	35, 194, 197
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	4 cut(s)	205, 288, 417, 460
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	152, 438
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	3 cut(s)	90, 224, 319
MseI	TTAA	2 cut(s)	395, 463
MspI	CCGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	305, 314
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	2 cut(s)	99, 408
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	403, 456
NlaIV	GGNNCC	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	295
NspI	RCATGY	1 cut(s)	403
PciI	ACATGT	1 cut(s)	399
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	271
PinAI	ACCGGT	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	256, 298, 316
PleI	GAGTC	2 cut(s)	151, 438
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	2 cut(s)	151, 438
PscI	ACATGT	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	395, 463
SatI	GCNGC	3 cut(s)	255, 297, 315
Sau3AI	GATC	2 cut(s)	99, 408
SchI	GAGTC	2 cut(s)	152, 438
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	3 cut(s)	175, 216, 356
SfcI	CTRYAG	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	157
Sse9I	AATT	4 cut(s)	205, 288, 417, 460
SspDI	GGCGCC	1 cut(s)	155
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	2 cut(s)	137, 231
TaaI	ACNGT	2 cut(s)	37, 279
TasI	AATT	4 cut(s)	205, 288, 417, 460
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	395, 463
Tru9I	TTAA	2 cut(s)	395, 463
TseI	GCWGC	3 cut(s)	254, 296, 314
TspDTI	ATGAA	3 cut(s)	195, 233, 381
VneI	GTGCAC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	2 cut(s)	137, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.