Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

68757 .. 70892

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgtcttcctttcagaaatattacttttctactgcaaaggagctgatcaggatcaatggaacaactaagtcttttaataacagcattatgttggagaagaaggcagatgaaaaggtgatactgctttcagaagaacataagagagaaaagaatgaattgtttagaacaattattgaattggaaaagcaacttgacgtcaaaactgcattggcgctagagattgagcgtataagaggtgctttattgttaatcaaacaaatgcatgaagatggggatttgcaagggcgaaataagatgaataagattgaggaactgttaaagaagaaggaagaggacttgaccatggtagaacttatcgtcaaggagtggataagtaatgatgaaattcaggaagctcagaaggagttgatcattggactgtgggattcatcaaaccaggcttttattcatgtgaagagagtgggagttgacatcaatccatttcagactgcaaccagcagaaattttttcaaagaagcaaatattgaattgttggagttgtggtctttatgggccgattatactagggacgaaagctggcacccattcaaagttattgtggataaagtaggaaatgcaaaggagtcattggtgtctgagatgaagtcctccgggcatatgcgtctttggacaagagttgacgtttttgccattgctttgctattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

235

Amino Acids

27.46

Weight (kDa)

5.86

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	579
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	384, 502
AcyI	GRCGYC	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	176, 511, 527, 589
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	43, 395, 576
AluI	AGCT	3 cut(s)	43, 395, 576
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	384, 502
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	579
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	437
BclI	TGATCA	2 cut(s)	45, 408
BcnI	CCSGG	1 cut(s)	652
BfaI	CTAG	2 cut(s)	215, 564
BfoI	RGCGCY	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	437, 652
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	2 cut(s)	437, 652
BpuMI	CCSGG	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	410, 627
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	581
BsnI	GGCC	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	45, 51, 408
Bsp19I	CCATGG	1 cut(s)	342
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	2 cut(s)	409, 628
BspLI	GGNNCC	1 cut(s)	581
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	45, 51, 408
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	315, 420
Bst6I	CTCTTC	2 cut(s)	324, 449
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	3 cut(s)	66, 396, 636
BstDSI	CCRYGG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	48, 54, 411
BstMBI	GATC	3 cut(s)	45, 51, 408
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	435, 650
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	578
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	650
CviAII	CATG	3 cut(s)	263, 343, 449
CviJI	RGCY	5 cut(s)	43, 395, 440, 554, 576
CviKI_1	RGCY	5 cut(s)	43, 395, 440, 554, 576
DdeI	CTNAG	3 cut(s)	66, 396, 636
DpnI	GATC	3 cut(s)	47, 53, 410
DpnII	GATC	3 cut(s)	45, 51, 408
Eam1104I	CTCTTC	2 cut(s)	324, 449
EarI	CTCTTC	2 cut(s)	324, 449
Eco130I	CCWWGG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	266, 346, 452
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	3 cut(s)	262, 342, 448
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	2 cut(s)	45, 408
FspBI	CTAG	2 cut(s)	215, 564
GlaI	GCGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	651
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	266, 346, 452
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	2 cut(s)	469, 679
HindII	GTYRAC	2 cut(s)	469, 679
HinfI	GANTC	2 cut(s)	425, 623
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	469, 679
Hpy188I	TCNGA	5 cut(s)	15, 130, 399, 486, 637
Hpy188III	TCNNGA	2 cut(s)	49, 389
Hpy8I	GTNNAC	2 cut(s)	469, 679
HpyAV	CCTTC	3 cut(s)	94, 319, 394
HpyCH4III	ACNGT	2 cut(s)	315, 420
HpyCH4IV	ACGT	2 cut(s)	195, 681
HpyCH4V	TGCA	6 cut(s)	35, 206, 262, 280, 491, 617
HpyF3I	CTNAG	3 cut(s)	66, 396, 636
HpySE526I	ACGT	2 cut(s)	195, 681
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	266, 346, 452
HspAI	GCGC	1 cut(s)	212
Ksp22I	TGATCA	2 cut(s)	45, 408
Kzo9I	GATC	3 cut(s)	45, 51, 408
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	34, 374, 422, 449, 508, 562, 664
MaeI	CTAG	2 cut(s)	215, 564
MaeII	ACGT	2 cut(s)	195, 681
MalI	GATC	3 cut(s)	47, 53, 410
MboI	GATC	3 cut(s)	45, 51, 408
MboII	GAAGA	6 cut(s)	109, 143, 278, 334, 341, 466
MluCI	AATT	6 cut(s)	155, 168, 176, 384, 502, 527
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	2 cut(s)	72, 513
MnlI	CCTC	4 cut(s)	227, 301, 325, 658
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	3 cut(s)	75, 248, 317
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	2 cut(s)	437, 652
MvaI	CCWGG	1 cut(s)	437
NciI	CCSGG	1 cut(s)	652
NcoI	CCATGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	3 cut(s)	45, 51, 408
NlaIII	CATG	3 cut(s)	266, 346, 452
NlaIV	GGNNCC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	425
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	75, 248, 317
Sau3AI	GATC	3 cut(s)	45, 51, 408
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	2 cut(s)	437, 652
SetI	ASST	7 cut(s)	45, 117, 198, 238, 397, 578, 684
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	6 cut(s)	155, 168, 176, 384, 502, 527
SspI	AATATT	2 cut(s)	20, 523
SspMI	CTAG	2 cut(s)	215, 564
StyD4I	CCNGG	2 cut(s)	435, 650
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	315, 420
TaiI	ACGT	2 cut(s)	198, 684
TasI	AATT	6 cut(s)	155, 168, 176, 384, 502, 527
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	75, 248, 317
Tru9I	TTAA	3 cut(s)	75, 248, 317
TspDTI	ATGAA	8 cut(s)	123, 168, 279, 311, 396, 417, 437, 656
XapI	RAATTY	2 cut(s)	384, 502
XspI	CTAG	2 cut(s)	215, 564
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.