Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

65668639 .. 65669287

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG464900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAATATTACTTTTCCACTGCAAAGGAGTTGATGAGGATCAATGGAACAACCAAGTCTTTTGTAGCAAATCATCTAGCAGAGTCTGTATCAGGCGCCATTACAATAAGAGATTTCAATGAAGAAGAGCGCTTCTTGGCAAAGAATTTTCACCTCATTGACACAAATGCTAGCCCATTTTTTCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGGTTAGAAATAATTTGCGCAGCAGTTCTCGCCTCTGCAGCACTCTGTATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGGGTTTATTGGAATGGTGCTTTCTTATGGTCTTTCATTAAACATGTCATTGATCTATTCAATTCAAAACCGGTGCACTATAAGGAGACTCAAAACATGGATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

134

Amino Acids

15.1

Weight (kDa)

8.91

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 114	8.8e-06	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	96
AfeI	AGCGCT	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	339
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	4 cut(s)	118, 215, 357, 362
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	131
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	194, 236, 254
ApoI	RAATTY	1 cut(s)	145
AsiGI	ACCGGT	1 cut(s)	366
AspLEI	GCGC	3 cut(s)	98, 132, 236
AsuHPI	GGTGA	1 cut(s)	143
AsuNHI	GCTAGC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	206, 248, 266
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	77, 171
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	2 cut(s)	99, 133
BisI	GCNGC	3 cut(s)	195, 237, 255
BlsI	GCNGC	3 cut(s)	196, 238, 256
BmiI	GGNNCC	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	374
BseXI	GCAGC	3 cut(s)	206, 248, 266
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	39, 348
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	366
BssMI	GATC	2 cut(s)	39, 348
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	172
BstH2I	RGCGCY	2 cut(s)	99, 133
BstHHI	GCGC	3 cut(s)	98, 132, 236
BstKTI	GATC	2 cut(s)	42, 351
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	39, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstNSI	RCATGY	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	206, 248, 266
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	3 cut(s)	98, 132, 236
Cfr10I	RCCGGY	1 cut(s)	366
CspAI	ACCGGT	1 cut(s)	366
CviAII	CATG	2 cut(s)	340, 393
CviJI	RGCY	2 cut(s)	174, 294
CviKI_1	RGCY	2 cut(s)	174, 294
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	2 cut(s)	41, 350
DpnII	GATC	2 cut(s)	39, 348
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	131
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
FaeI	CATG	2 cut(s)	343, 396
FaiI	YATR	6 cut(s)	186, 266, 324, 341, 377, 394
FatI	CATG	2 cut(s)	339, 392
Fnu4HI	GCNGC	3 cut(s)	195, 237, 255
Fsp4HI	GCNGC	3 cut(s)	195, 237, 255
FspBI	CTAG	2 cut(s)	77, 171
FspI	TGCGCA	1 cut(s)	235
GlaI	GCGC	3 cut(s)	97, 131, 235
GluI	GCNGC	3 cut(s)	195, 237, 255
HaeII	RGCGCY	2 cut(s)	99, 133
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	3 cut(s)	98, 132, 236
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	343, 396
Hin6I	GCGC	3 cut(s)	96, 130, 234
HinP1I	GCGC	3 cut(s)	96, 130, 234
HinfI	GANTC	3 cut(s)	83, 211, 384
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	23, 194, 254, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	343, 396
HspAI	GCGC	3 cut(s)	96, 130, 234
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	39, 348
LguI	GCTCTTC	1 cut(s)	120
LpnPI	CCDG	4 cut(s)	78, 267, 282, 380
Lsp1109I	GCAGC	3 cut(s)	206, 248, 266
MaeI	CTAG	2 cut(s)	77, 171
MalI	GATC	2 cut(s)	41, 350
MboI	GATC	2 cut(s)	39, 348
MboII	GAAGA	2 cut(s)	134, 137
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	4 cut(s)	145, 228, 357, 400
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	92, 378
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	30, 164, 259
MseI	TTAA	2 cut(s)	335, 403
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NarI	GGCGCC	1 cut(s)	96
NdeII	GATC	2 cut(s)	39, 348
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	343, 396
NlaIV	GGNNCC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	235
NspI	RCATGY	1 cut(s)	343
PciI	ACATGT	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	196, 238, 256
PleI	GAGTC	2 cut(s)	91, 378
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	2 cut(s)	91, 378
PscI	ACATGT	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	335, 403
SatI	GCNGC	3 cut(s)	195, 237, 255
Sau3AI	GATC	2 cut(s)	39, 348
SchI	GAGTC	2 cut(s)	92, 378
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	2 cut(s)	156, 296
SfcI	CTRYAG	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	97
Sse9I	AATT	4 cut(s)	145, 228, 357, 400
SspDI	GGCGCC	1 cut(s)	95
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	2 cut(s)	77, 171
TaaI	ACNGT	1 cut(s)	219
TasI	AATT	4 cut(s)	145, 228, 357, 400
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	335, 403
Tru9I	TTAA	2 cut(s)	335, 403
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	3 cut(s)	194, 236, 254
TspDTI	ATGAA	4 cut(s)	17, 135, 173, 321
TspRI	CASTG	1 cut(s)	25
VneI	GTGCAC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	2 cut(s)	77, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.