Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Forward (+)

779537 .. 782852

Gene Structure 3316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAAGAGAATTTTTCGAATCCATACTGAGAAATATAAATTTAGAGATCAGAGCTAGTGAAAAGGTGGCTATATGTGGAGAATTTGGCTCATTCAAATCAAGCCTTCTAGCTGCAATTCTTGGAGAAATTCCAAATGTGCAAGGAAATATGTTGGATGGGGAGATCCTACAAGCAGCTCCTTATTATCATTTAATGGCCTCGAGCCAAAAATTTCAGGTCCTTGTTAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTTCAGACATTAAGAAGACTTACGTGGAGAAGCTACTGAAAGCAAGTAAAGGTGATCAACCAATTAAACTAGAAGAGAGAGAGACAGGAGACACAGGTTTCAAGCCATATATACTATCTCTTGCAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCTTTGTTTTCACAATTACTAAACTCCCTTTTTCGTGCAGCCATATCATTCTATGACTCAACATCACTGGGAAGGATACTTAGTCGGGTTTCATCTGATCTGAGCATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGTAGCCACCATGAATGCCTATTGCAATCTTGGAGTGTTGACTGTTGTTACCTGGCAAGTCCTGTTTGTCTCCATACCAATGGTCTGTGTCGCAATTCAGCTAGATGAATTTGGCACCACAAATACCACCAGCACCAGGCACCAGGCACCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

240

Amino Acids

26.19

Weight (kDa)

5.68

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	10 - 76	1.5e-06	ABC transporter
ABC_membrane	PF00664	133 - 217	1.5e-08	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AccB1I	GGYRCC	3 cut(s)	677, 702, 709
AclWI	GGATC	1 cut(s)	160
AcsI	RAATTY	6 cut(s)	11, 40, 83, 129, 212, 671
AfiI	CCNNNNNNNGG	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	97, 364
AjnI	CCWGG	3 cut(s)	614, 698, 705
AluBI	AGCT	5 cut(s)	56, 113, 179, 295, 664
AluI	AGCT	5 cut(s)	56, 113, 179, 295, 664
Alw26I	GTCTC	4 cut(s)	338, 345, 401, 637
AlwI	GGATC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	4 cut(s)	113, 176, 386, 455
ApoI	RAATTY	6 cut(s)	11, 40, 83, 129, 212, 671
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	18
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	220
BanI	GGYRCC	3 cut(s)	677, 702, 709
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	100, 188, 398, 467
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	3 cut(s)	616, 700, 707
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	4 cut(s)	338, 345, 401, 637
BfaI	CTAG	4 cut(s)	57, 110, 332, 665
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	4 cut(s)	114, 177, 387, 456
BlsI	GCNGC	4 cut(s)	115, 178, 388, 457
Bme1390I	CCNGG	3 cut(s)	616, 700, 707
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	679, 704, 711
BmrFI	CCNGG	3 cut(s)	616, 700, 707
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	425
BsaAI	YACGTR	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse1I	ACTGG	1 cut(s)	489
BseBI	CCWGG	3 cut(s)	616, 700, 707
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMII	CTCAG	2 cut(s)	20, 509
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	100, 188, 398, 467
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	3 cut(s)	677, 702, 709
BsiHKCI	CYCGRG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmAI	GTCTC	4 cut(s)	338, 345, 401, 637
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	48, 165, 316, 514, 529
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	21, 510
BspLI	GGNNCC	3 cut(s)	679, 704, 711
BspPI	GGATC	1 cut(s)	160
BspT104I	TTCGAA	1 cut(s)	18
BspT107I	GGYRCC	3 cut(s)	677, 702, 709
BsrI	ACTGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	48, 165, 316, 514, 529
Bst2UI	CCWGG	3 cut(s)	616, 700, 707
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	29, 497, 518
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	5 cut(s)	51, 168, 319, 517, 532
BstMAI	GTCTC	4 cut(s)	338, 345, 401, 637
BstMBI	GATC	5 cut(s)	48, 165, 316, 514, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	3 cut(s)	616, 700, 707
BstSCI	CCNGG	3 cut(s)	614, 698, 705
BstV1I	GCAGC	4 cut(s)	100, 188, 398, 467
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	165, 529
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	2 cut(s)	165, 529
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	29, 497, 518
DpnI	GATC	5 cut(s)	50, 167, 318, 516, 531
DpnII	GATC	5 cut(s)	48, 165, 316, 514, 529
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	614, 698, 705
FaeI	CATG	1 cut(s)	577
FatI	CATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	114, 177, 387, 456
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	114, 177, 387, 456
FspBI	CTAG	4 cut(s)	57, 110, 332, 665
GluI	GCNGC	4 cut(s)	114, 177, 387, 456
HaeIII	GGCC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	2 cut(s)	20, 473
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	5 cut(s)	53, 256, 268, 514, 519
Hpy188III	TCNNGA	2 cut(s)	404, 533
Hpy8I	GTNNAC	1 cut(s)	603
HpyAV	CCTTC	2 cut(s)	116, 483
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	6 cut(s)	116, 142, 233, 386, 455, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	3 cut(s)	29, 497, 518
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	48, 165, 316, 514, 529
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	4 cut(s)	100, 188, 398, 467
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	4 cut(s)	57, 110, 332, 665
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	5 cut(s)	50, 167, 318, 516, 531
MboI	GATC	5 cut(s)	48, 165, 316, 514, 529
MboII	GAAGA	3 cut(s)	18, 289, 347
MflI	RGATCY	2 cut(s)	165, 529
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	211
MseI	TTAA	4 cut(s)	194, 228, 273, 327
MslI	CAYNNNNRTG	1 cut(s)	641
MspR9I	CCNGG	3 cut(s)	616, 700, 707
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	3 cut(s)	616, 700, 707
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	5 cut(s)	48, 165, 316, 514, 529
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	3 cut(s)	679, 704, 711
NspV	TTCGAA	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	202
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	115, 178, 388, 457
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	3 cut(s)	614, 698, 705
PspGI	CCWGG	3 cut(s)	614, 698, 705
PspN4I	GGNNCC	3 cut(s)	679, 704, 711
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	165, 529
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	4 cut(s)	194, 228, 273, 327
SatI	GCNGC	4 cut(s)	114, 177, 387, 456
Sau3AI	GATC	5 cut(s)	48, 165, 316, 514, 529
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	3 cut(s)	616, 700, 707
SfaNI	GCATC	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	202, 404
SmoI	CTYRAG	2 cut(s)	202, 404
SspMI	CTAG	4 cut(s)	57, 110, 332, 665
StyD4I	CCNGG	3 cut(s)	614, 698, 705
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	18, 203
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	194, 228, 273, 327
Tru9I	TTAA	4 cut(s)	194, 228, 273, 327
TscAI	CASTG	1 cut(s)	489
TseI	GCWGC	4 cut(s)	113, 176, 386, 455
TspDTI	ATGAA	3 cut(s)	498, 590, 684
TspRI	CASTG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	6 cut(s)	11, 40, 83, 129, 212, 671
XhoI	CTCGAG	1 cut(s)	202
XspI	CTAG	4 cut(s)	57, 110, 332, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.