Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017811.1

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

2034 .. 2489

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgaagattactgagactatggaagccgttctgttactaaatcattgtttcaagatgactagtaaatggagcaatagcctctccttagatgcaatggcatggagcttttctcaggtacagttattggcctcgagccaagagtttcaggaccatttcaatgcacacaaagaaactgctggttctgaaaggcttgcacatgtcccttctgtccaaaattctggaacatcatccggagagattaagaaggcttatgtagagaacaaattgaaaggaaataaaggtgaccaactgattaagatagaagagagggaaataggagacactggttcgaggccatacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

114

Amino Acids

12.77

Weight (kDa)

6.91

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	52, 157, 268
AhlI	ACTAGT	1 cut(s)	59
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	8, 312
Ama87I	CYCGRG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	2 cut(s)	126, 332
ApoI	RAATTY	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	8, 312
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BsaWI	WCCGGW	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	230
BseGI	GGATG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	128, 334
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	8, 312
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	128, 334
BsoBI	CYCGRG	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	230
BspANI	GGCC	2 cut(s)	128, 334
BspCNI	CTCAG	2 cut(s)	4, 124
BspEI	TCCGGA	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	12, 85, 111
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	227
BstMAI	GTCTC	2 cut(s)	8, 312
BstNSI	RCATGY	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	281
BstXI	CCANNNNNNTGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	128, 334
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	99, 197
CviJI	RGCY	8 cut(s)	26, 78, 105, 128, 135, 190, 248, 334
CviKI_1	RGCY	8 cut(s)	26, 78, 105, 128, 135, 190, 248, 334
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	3 cut(s)	12, 85, 111
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
FaeI	CATG	2 cut(s)	102, 200
FaiI	YATR	5 cut(s)	20, 100, 198, 252, 337
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	98, 196
FokI	GGATG	1 cut(s)	214
FspBI	CTAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	128, 334
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	102, 200
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	52, 146, 219, 231
HpyAV	CCTTC	2 cut(s)	213, 238
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	92, 161, 194
HpyF3I	CTNAG	3 cut(s)	12, 85, 111
Hsp92II	CATG	2 cut(s)	102, 200
Kpn2I	TCCGGA	1 cut(s)	230
LmnI	GCTCC	2 cut(s)	69, 102
LpnPI	CCDG	6 cut(s)	98, 131, 162, 204, 244, 309
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	33, 281
MboII	GAAGA	2 cut(s)	16, 314
MluCI	AATT	2 cut(s)	214, 263
MnlI	CCTC	4 cut(s)	89, 139, 300, 324
MroI	TCCGGA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	240, 294
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	1 cut(s)	231
NlaIII	CATG	2 cut(s)	102, 200
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	130
PciI	ACATGT	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	27
PscI	ACATGT	1 cut(s)	196
PspEI	GGTNACC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	130
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	240, 294
Sau96I	GGNCC	1 cut(s)	148
SetI	ASST	3 cut(s)	107, 117, 283
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	2 cut(s)	214, 263
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	131, 329
TasI	AATT	2 cut(s)	214, 263
Tru1I	TTAA	2 cut(s)	240, 294
Tru9I	TTAA	2 cut(s)	240, 294
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.