Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

36648740 .. 36651508

Gene Structure 2769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTGGAGAATTTGGCTCAGGCAATCAAGCCTTCTAGCTGCAATTCTTGGAGAAATTCTAAATGTGCAAGGAAATTTGATGTTGGATGGGGAGATCCTGCAAGCAGCTCCTTATTATCATTTAATGGCCTCGAGCCAAAAATTTCAGGACCTTGTTAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTTCAGATGTCACTTCTGCTCAAAACTCTGGAATATCATCTAAAGAGATTAAGAAGACTTACGTGGAGAAGCCACTGAAAGCAAGTAAAGGTGATCAACTAATTAAACTAGAAGAGAGAGAGAGACAGGAGACACAGATCTCTTTAGCAGTTGTTGGGGGTCTTGAGACATCAAAGTCTTTGTTTTCACAATTACTAAACTCCCTTTTTCGTGCAGCCATATCATTCTATGACTCAACATCACTGGGAAGGATACTTAGTCGAGTTTCATCTGATCTGAGCATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGTAGCTACCATGAATTATGAAAGTATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

181

Amino Acids

20.08

Weight (kDa)

6.14

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	113 - 157	1.5e-06	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	4 cut(s)	9, 54, 73, 140
AluBI	AGCT	3 cut(s)	38, 107, 518
AluI	AGCT	3 cut(s)	38, 107, 518
Alw26I	GTCTC	3 cut(s)	307, 314, 350
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	38, 104, 404
ApoI	RAATTY	4 cut(s)	9, 54, 73, 140
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	25, 116, 416
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	307, 314, 350
BfaI	CTAG	2 cut(s)	35, 299
BfuI	GTATCC	1 cut(s)	435
BglII	AGATCT	2 cut(s)	327, 478
BisI	GCNGC	3 cut(s)	39, 105, 405
BlsI	GCNGC	3 cut(s)	40, 106, 406
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	31, 458
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	25, 116, 416
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	130
BsmAI	GTCTC	3 cut(s)	307, 314, 350
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	5 cut(s)	93, 283, 327, 463, 478
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	30, 459
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	438
BssMI	GATC	5 cut(s)	93, 283, 327, 463, 478
Bst6I	CTCTTC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	17, 446, 467
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	5 cut(s)	96, 286, 330, 466, 481
BstMAI	GTCTC	3 cut(s)	307, 314, 350
BstMBI	GATC	5 cut(s)	93, 283, 327, 463, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstV1I	GCAGC	3 cut(s)	25, 116, 416
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	3 cut(s)	93, 327, 478
BstYI	RGATCY	3 cut(s)	93, 327, 478
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	263, 431
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	148
CviAII	CATG	1 cut(s)	523
DdeI	CTNAG	3 cut(s)	17, 446, 467
DpnI	GATC	5 cut(s)	95, 285, 329, 465, 480
DpnII	GATC	5 cut(s)	93, 283, 327, 463, 478
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	148
FaeI	CATG	1 cut(s)	526
FaiI	YATR	6 cut(s)	410, 420, 500, 524, 531, 539
FatI	CATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	39, 105, 405
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	39, 105, 405
FspBI	CTAG	2 cut(s)	35, 299
GluI	GCNGC	3 cut(s)	39, 105, 405
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	526
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	184, 196, 463, 468
Hpy188III	TCNNGA	4 cut(s)	146, 219, 353, 482
HpyAV	CCTTC	2 cut(s)	41, 432
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	5 cut(s)	41, 67, 100, 161, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	17, 446, 467
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	93, 283, 327, 463, 478
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	7 cut(s)	4, 110, 131, 162, 204, 302, 419
Lsp1109I	GCAGC	3 cut(s)	25, 116, 416
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	35, 299
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	95, 285, 329, 465, 480
MboI	GATC	5 cut(s)	93, 283, 327, 463, 478
MboII	GAAGA	2 cut(s)	256, 314
MflI	RGATCY	3 cut(s)	93, 327, 478
MluCI	AATT	8 cut(s)	9, 42, 54, 73, 140, 291, 380, 526
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	1 cut(s)	139
MseI	TTAA	4 cut(s)	122, 156, 240, 294
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeII	GATC	5 cut(s)	93, 283, 327, 463, 478
NlaIII	CATG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	40, 106, 406
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	93, 327, 478
SaqAI	TTAA	4 cut(s)	122, 156, 240, 294
SatI	GCNGC	3 cut(s)	39, 105, 405
Sau3AI	GATC	5 cut(s)	93, 283, 327, 463, 478
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	416
SetI	ASST	6 cut(s)	40, 109, 153, 255, 283, 520
SfaNI	GCATC	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	130, 353
SmoI	CTYRAG	2 cut(s)	130, 353
Sse9I	AATT	8 cut(s)	9, 42, 54, 73, 140, 291, 380, 526
SspMI	CTAG	2 cut(s)	35, 299
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	131, 451
TasI	AATT	8 cut(s)	9, 42, 54, 73, 140, 291, 380, 526
Tru1I	TTAA	4 cut(s)	122, 156, 240, 294
Tru9I	TTAA	4 cut(s)	122, 156, 240, 294
TscAI	CASTG	2 cut(s)	270, 438
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	38, 104, 404
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	447, 539, 546
TspRI	CASTG	2 cut(s)	270, 438
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	4 cut(s)	9, 54, 73, 140
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	2 cut(s)	35, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.