Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001692

Physical Location & Seq

Genomic Coordinates Reverse (-)

63914634 .. 63915135

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG425900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGATATGCAAACTCGATGAAGATTACTGAGACTATGGAAGCCGTTCTGTTACTAAATCATTGTTTCAAGATGACTAGTAAATGGAGCAGTAGCCTCTCCTTAGATGCAATGGCATGGAGCTTTTCTCAGTTATTGGCCTCGAGCCAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAAACTGCTGGTTCTGAAAGGCTTGCACATGTCCCTTCAGTCCAAAATTCTGGAACATCATCCGGAGAGATTAAGAAGGCTTATGTAGAGAAGAAATTGAAAGGAAATAAAGGTGACCAGCTGATTAAGATAGAAGAGAGAGAAATAGGAGACACTGGTTCGAGGCCATACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

8.71

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001692)

Species	Orthologous Gene IDs
malus_domestica	MD14G1118400.v1.1 MD14G1118500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0313931 RchiOBHm_Chr1g0313941 RchiOBHm_Chr1g0379781 RchiOBHm_Chr1g0382981 RchiOBHm_Chr1g0382991 RchiOBHm_Chr4g0395791 RchiOBHm_Chr5g0041741
rosa_laevigata	RLG00000009799 RLG00000014124 RLG00000019352 RLG00000020405 RLG00000026141 RLG00000034664
rosa_multiflora	Rmu_co8205360.1_g000001 Rmu_sc0000367.1_g000050 Rmu_sc0000996.1_g000001 Rmu_sc0007472.1_g000022 Rmu_sc0008656.1_g000001 Rmu_sc0015720.1_g000008 Rmu_sc0017811.1_g000001 Rmu_sc0027144.1_g000001 Rmu_ssc0000309.1_g000021
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG007600 Rh1AG329200 Rh1AG438900 Rh1AG439000 Rh1AG463100 Rh1CG408300 Rh1DG425800 Rh1DG425900 Rh2AG345600 Rh2BG250900 Rh2BG464900 Rh3CG347700 Rh5BG286200 Rh5BG459300 Rh5CG481600 Rh5DG076300 Rh5DG294900 Rh5DG406600 Rh5DG406700 Rh6AG164300 Rh7AG254800 Rh7AG254900 Rh7CG271500 Rh7CG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	70, 280
AhlI	ACTAGT	1 cut(s)	77
AluBI	AGCT	2 cut(s)	123, 301
AluI	AGCT	2 cut(s)	123, 301
Alw26I	GTCTC	2 cut(s)	26, 324
Ama87I	CYCGRG	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	2 cut(s)	138, 344
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	26, 324
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BsaWI	WCCGGW	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	242
BseGI	GGATG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	21, 143
BseNI	ACTGG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	140, 346
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	26, 324
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	140, 346
BsoBI	CYCGRG	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	242
BspANI	GGCC	2 cut(s)	140, 346
BspCNI	CTCAG	2 cut(s)	22, 142
BspEI	TCCGGA	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	30, 103, 129
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	239
BstMAI	GTCTC	2 cut(s)	26, 324
BstNSI	RCATGY	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	140, 346
BtsCI	GGATG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	160
CviAII	CATG	2 cut(s)	117, 209
CviJI	RGCY	9 cut(s)	44, 96, 123, 140, 147, 202, 260, 301, 346
CviKI_1	RGCY	9 cut(s)	44, 96, 123, 140, 147, 202, 260, 301, 346
DdeI	CTNAG	3 cut(s)	30, 103, 129
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	293
FaeI	CATG	2 cut(s)	120, 212
FaiI	YATR	6 cut(s)	9, 38, 118, 210, 264, 349
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	116, 208
FokI	GGATG	1 cut(s)	226
FspBI	CTAG	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	140, 346
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	2 cut(s)	120, 212
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	4 cut(s)	70, 158, 231, 243
HpyAV	CCTTC	2 cut(s)	225, 250
HpyCH4V	TGCA	4 cut(s)	11, 110, 173, 206
HpyF3I	CTNAG	3 cut(s)	30, 103, 129
Hsp92II	CATG	2 cut(s)	120, 212
Kpn2I	TCCGGA	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	87, 120
LpnPI	CCDG	6 cut(s)	143, 174, 216, 256, 311, 321
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	51, 293
MboII	GAAGA	3 cut(s)	34, 283, 326
MluCI	AATT	2 cut(s)	226, 275
MnlI	CCTC	3 cut(s)	107, 151, 336
MroI	TCCGGA	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	252, 306
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	243
NlaIII	CATG	2 cut(s)	120, 212
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	142
PciI	ACATGT	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PspXI	VCTCGAGB	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	252, 306
Sau96I	GGNCC	1 cut(s)	160
SetI	ASST	4 cut(s)	125, 165, 295, 303
SfaNI	GCATC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	160
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	2 cut(s)	226, 275
SspMI	CTAG	1 cut(s)	78
TaqI	TCGA	3 cut(s)	17, 143, 341
TasI	AATT	2 cut(s)	226, 275
Tru1I	TTAA	2 cut(s)	252, 306
Tru9I	TTAA	2 cut(s)	252, 306
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.