RLG00000019352

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001692
Physical Location & Seq
Reverse (-)
50654493 .. 50654992
500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019352

Sequence Viewer

Length: 309 bp
ATGACCTCCATCTCATTCAGTTGTGAATCTGAGCCTCAGAAGTCATGCTTCGTCGATCGGTGGCGCGGCGTCGGAGTTCCACACCTCTATTTGAAGGAGATTGCTTCGCTCCTTGAGACCGCTGCATACACCAAGGAGGTCCGGCGACTTGTCCGCGCCGTTAGGCTGACGACGGCGAAGAGGCGGAAGCTGAGTGTTTCTGTGCCCTCATTTCTCAATTTTTCCTTTTCGCCGGGATCTGATGCTCACACCAAGCTACACAATTATATTGCAAAGAAGATAGGTTGTCCTCCTATCTTCCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI Rpn3_C

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

10.24

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 66, 156
AciI CCGC 4 cut(s) 66, 120, 154, 184
AclWI GGATC 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 69
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 2 cut(s) 190, 256
AluI AGCT 2 cut(s) 190, 256
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 122
AspLEI GCGC 2 cut(s) 66, 158
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 17
BceAI ACGGC 2 cut(s) 143, 189
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 110
BisI GCNGC 2 cut(s) 67, 123
BlsI GCNGC 2 cut(s) 68, 124
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 21, 50, 182
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 66, 156
Bsh1285I CGRYCG 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 58
BsiSI CCGG 2 cut(s) 142, 233
BsmAI GTCTC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 55, 236
BspACI CCGC 4 cut(s) 66, 120, 154, 184
BspCNI CTCAG 3 cut(s) 22, 49, 183
BspFNI CGCG 2 cut(s) 66, 156
BspPI GGATC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 55, 236
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 3 cut(s) 30, 36, 191
BstFNI CGCG 2 cut(s) 66, 156
BstHHI GCGC 2 cut(s) 66, 158
BstKTI GATC 2 cut(s) 58, 239
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 55, 236
BstMCI CGRYCG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 2 cut(s) 66, 156
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
CfoI GCGC 2 cut(s) 66, 158
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 58
CviAII CATG 1 cut(s) 45
CviJI RGCY 4 cut(s) 34, 166, 190, 256
CviKI_1 RGCY 4 cut(s) 34, 166, 190, 256
DdeI CTNAG 3 cut(s) 30, 36, 191
DpnI GATC 2 cut(s) 57, 238
DpnII GATC 2 cut(s) 55, 236
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 46, 127, 267
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 67, 123
Fsp4HI GCNGC 2 cut(s) 67, 123
GlaI GCGC 2 cut(s) 65, 157
GluI GCNGC 2 cut(s) 67, 123
HapII CCGG 2 cut(s) 142, 233
HgaI GACGC 1 cut(s) 58
HhaI GCGC 2 cut(s) 66, 158
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 2 cut(s) 64, 156
HinP1I GCGC 2 cut(s) 64, 156
HinfI GANTC 1 cut(s) 26
HpaII CCGG 2 cut(s) 142, 233
Hpy188I TCNGA 5 cut(s) 31, 39, 74, 241, 302
Hpy99I CGWCG 3 cut(s) 56, 74, 175
HpyAV CCTTC 2 cut(s) 88, 297
HpyCH4V TGCA 2 cut(s) 125, 272
HpyF3I CTNAG 3 cut(s) 30, 36, 191
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 2 cut(s) 64, 156
Kzo9I GATC 2 cut(s) 55, 236
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 2 cut(s) 155, 246
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 232
MalI GATC 2 cut(s) 57, 238
MboI GATC 2 cut(s) 55, 236
MboII GAAGA 3 cut(s) 190, 289, 289
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 217, 262
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 7 cut(s) 16, 45, 95, 130, 174, 217, 300
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 2 cut(s) 142, 233
MspR9I CCNGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 66, 156
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 55, 236
NlaIII CATG 1 cut(s) 48
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 68, 124
Ple19I CGATCG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 236
PvuI CGATCG 1 cut(s) 58
SatI GCNGC 2 cut(s) 67, 123
Sau3AI GATC 2 cut(s) 55, 236
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 8, 87, 141, 192, 258, 286, 308
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 217, 262
SsiI CCGC 4 cut(s) 66, 120, 154, 184
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 132
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 217, 262
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 26
TseI GCWGC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.