Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

67926089 .. 67937417

Gene Structure 11329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG463200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCATCCTTCTTTTCCACCTTCAGATCCAGATCCACATCTATTGGTTGCCGATGAAAGCCAAATTGCTATGTATGACAGCAAGCCTGATTGTTTACGCTTTTTTTGTGACGGTGCTGTGGGAGTTTTTGATGCTGATAGCTTAAGACTCAGATGTCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGCGGTGGCAACCCCTCCTATCCTCTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGACGGGTCAGTGCATGTGGTTGAACCATCTGATGCAGAACTGAAGTGGGGTGGCACACCCTCTCAAGATAATGGTCCTTCCAATTCATCAAATCCGTCTCCTAGTGGTCAAGCATCAGAACTTCCTTCCAGATCCAAGGAGTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACTAAAGGTGATTGCATCCACTGGGAGATTTTGGCACGATTGGGACAAATCAAAGAGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCACAGTATCCTGATGCAGAAAAGACTATTGAGCAGCAAAATACTACTCTAGGAGAAACCTACCTAGAACTGGCCGCTCTTCATGGTTTTACCGAAGGTCCTCCGTTTACCCTTCAGAGATATAATTTTTGTTTTGAATATTTTTTTTGTCAAGCAGATCCTATTGGATGCGCGCAGCATCTACCATTCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTATCTCAATGGATCCGTGTCCGCATTCAGTGTTGCAAAAGACAGATGAATCAGAAAAAGTAAGTGAAGAACCTAAACTTCACTCTGACGCAAATGGGGTGGAACCTATGGTAGGTGACAGGGATGAAGTAATGGTAGAGGTTGAGCAGGAGCGGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTTATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGATACTTACTACAAGTGCTGGTCCCTTGCTTCTCAATGCCTTCATTAGGGTTGCAAAGGGAAATGAAAGTTCCGAGCACGAAGGCAGTGGTACTTCAGGTGCAGGCTTATTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

387

Amino Acids

42.22

Weight (kDa)

4.95

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	153, 277
Acc36I	ACCTGC	1 cut(s)	523
AccBSI	CCGCTC	2 cut(s)	617, 949
AccII	CGCG	1 cut(s)	713
AciI	CCGC	4 cut(s)	198, 615, 818, 949
AclWI	GGATC	6 cut(s)	20, 26, 399, 692, 803, 816
AcoI	YGGCCR	1 cut(s)	612
AcuI	CTGAAG	5 cut(s)	6, 335, 548, 638, 1125
AfaI	GTAC	1 cut(s)	1138
AfiI	CCNNNNNNNGG	3 cut(s)	610, 908, 1092
AflII	CTTAAG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	296, 677, 975
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	5 cut(s)	141, 233, 526, 748, 758
AluI	AGCT	5 cut(s)	141, 233, 526, 748, 758
Alw21I	GWGCWC	1 cut(s)	1125
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	6 cut(s)	20, 26, 399, 692, 803, 816
AlwNI	CAGNNNCTG	1 cut(s)	538
AoxI	GGCC	2 cut(s)	612, 1026
ApeKI	GCWGC	3 cut(s)	230, 574, 715
AspLEI	GCGC	3 cut(s)	166, 713, 715
AspS9I	GGNCC	3 cut(s)	347, 638, 1067
AsuHPI	GGTGA	4 cut(s)	449, 472, 793, 923
AvaII	GGWCC	3 cut(s)	347, 638, 1067
BamHI	GGATCC	1 cut(s)	808
BauI	CACGAG	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	1125
BbvI	GCAGC	3 cut(s)	242, 586, 727
BccI	CCATC	5 cut(s)	190, 247, 307, 428, 988
BciVI	GTATCC	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	6 cut(s)	375, 590, 605, 755, 761, 1016
BfoI	RGCGCY	1 cut(s)	167
BfrI	CTTAAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	558
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	5 cut(s)	231, 575, 615, 716, 950
BlsI	GCNGC	5 cut(s)	232, 576, 616, 717, 951
Bme18I	GGWCC	3 cut(s)	347, 638, 1067
BmgT120I	GGNCC	3 cut(s)	347, 638, 1067
BmiI	GGNNCC	3 cut(s)	810, 900, 1069
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	8 cut(s)	13, 121, 295, 395, 476, 544, 698, 727
BmuI	ACTGGG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	321
BsaBI	GATNNNNATC	2 cut(s)	30, 36
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	3 cut(s)	610, 908, 1092
Bse1I	ACTGG	2 cut(s)	478, 615
Bse8I	GATNNNNATC	2 cut(s)	30, 36
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	5 cut(s)	4, 235, 467, 713, 925
BseJI	GATNNNNATC	2 cut(s)	30, 36
BseLI	CCNNNNNNNGG	3 cut(s)	610, 908, 1092
BseMII	CTCAG	3 cut(s)	163, 208, 234
BseNI	ACTGG	2 cut(s)	478, 615
BsePI	GCGCGC	1 cut(s)	711
BseXI	GCAGC	3 cut(s)	242, 586, 727
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	2 cut(s)	614, 1028
BsiHKAI	GWGCWC	1 cut(s)	1125
BslFI	GGGAC	2 cut(s)	509, 1053
BslI	CCNNNNNNNGG	3 cut(s)	610, 908, 1092
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	509, 1053
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	614, 1028
Bsp1286I	GDGCHC	1 cut(s)	1125
Bsp143I	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
BspACI	CCGC	4 cut(s)	198, 615, 818, 949
BspANI	GGCC	2 cut(s)	614, 1028
BspCNI	CTCAG	3 cut(s)	162, 207, 235
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	3 cut(s)	810, 900, 1069
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	6 cut(s)	20, 26, 399, 692, 803, 816
BspQI	GCTCTTC	1 cut(s)	624
BspTI	CTTAAG	1 cut(s)	142
BsrBI	CCGCTC	2 cut(s)	617, 949
BsrI	ACTGG	2 cut(s)	478, 615
BssECI	CCNNGG	1 cut(s)	408
BssHII	GCGCGC	1 cut(s)	711
BssMI	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	113, 546
Bst6I	CTCTTC	1 cut(s)	624
BstAFI	CTTAAG	1 cut(s)	142
BstC8I	GCNNGC	5 cut(s)	83, 512, 713, 750, 1150
BstDEI	CTNAG	3 cut(s)	149, 194, 243
BstENI	CCTNNNNNAGG	2 cut(s)	906, 1090
BstF5I	GGATG	5 cut(s)	4, 235, 467, 713, 925
BstFNI	CGCG	1 cut(s)	713
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	3 cut(s)	166, 713, 715
BstKTI	GATC	7 cut(s)	28, 34, 407, 700, 811, 1007, 1015
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 949
BstNSI	RCATGY	2 cut(s)	290, 514
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	242, 586, 727
BstX2I	RGATCY	6 cut(s)	25, 31, 404, 697, 808, 1012
BstYI	RGATCY	6 cut(s)	25, 31, 404, 697, 808, 1012
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	614, 1028
BtsCI	GGATG	5 cut(s)	4, 235, 467, 713, 925
BtsI	GCAGTG	1 cut(s)	1138
BtsIMutI	CAGTG	4 cut(s)	288, 471, 831, 1138
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	5 cut(s)	83, 512, 713, 750, 1150
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	3 cut(s)	166, 713, 715
Cfr13I	GGNCC	3 cut(s)	347, 638, 1067
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	1 cut(s)	1137
CspCI	CAANNNNNGTGG	4 cut(s)	24, 59, 876, 911
CviAII	CATG	4 cut(s)	268, 287, 511, 623
CviQI	GTAC	1 cut(s)	1137
DdeI	CTNAG	3 cut(s)	149, 194, 243
DpnI	GATC	7 cut(s)	27, 33, 406, 699, 810, 1006, 1014
DpnII	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
DrdI	GACNNNNNNGTC	2 cut(s)	153, 277
DseDI	GACNNNNNNGTC	2 cut(s)	153, 277
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	3 cut(s)	347, 638, 1067
Eco57I	CTGAAG	5 cut(s)	6, 335, 548, 638, 1125
EcoNI	CCTNNNNNAGG	2 cut(s)	906, 1090
EcoO109I	RGGNCCY	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	4 cut(s)	271, 290, 514, 626
FaqI	GGGAC	2 cut(s)	509, 1053
FatI	CATG	4 cut(s)	267, 286, 510, 622
Fnu4HI	GCNGC	5 cut(s)	231, 575, 615, 716, 950
FokI	GGATG	4 cut(s)	222, 454, 720, 932
Fsp4HI	GCNGC	5 cut(s)	231, 575, 615, 716, 950
FspBI	CTAG	6 cut(s)	375, 590, 605, 755, 761, 1016
GlaI	GCGC	3 cut(s)	165, 712, 714
GluI	GCNGC	5 cut(s)	231, 575, 615, 716, 950
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	614, 1028
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	3 cut(s)	166, 713, 715
Hin1II	CATG	4 cut(s)	271, 290, 514, 626
Hin6I	GCGC	3 cut(s)	164, 711, 713
HinP1I	GCGC	3 cut(s)	164, 711, 713
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	4 cut(s)	147, 413, 736, 845
HphI	GGTGA	4 cut(s)	449, 472, 793, 923
Hpy166II	GTNNAC	2 cut(s)	95, 648
Hpy188III	TCNNGA	5 cut(s)	29, 338, 402, 551, 761
Hpy8I	GTNNAC	2 cut(s)	95, 648
HpyAV	CCTTC	9 cut(s)	18, 30, 177, 360, 408, 629, 662, 1096, 1121
HpyCH4III	ACNGT	2 cut(s)	113, 546
HpyCH4V	TGCA	9 cut(s)	4, 260, 286, 308, 467, 557, 832, 1100, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 949
HpyF3I	CTNAG	3 cut(s)	149, 194, 243
Hsp92II	CATG	4 cut(s)	271, 290, 514, 626
HspAI	GCGC	3 cut(s)	164, 711, 713
Kzo9I	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	3 cut(s)	242, 586, 727
LweI	GCATC	8 cut(s)	13, 121, 295, 395, 476, 544, 698, 727
MaeI	CTAG	6 cut(s)	375, 590, 605, 755, 761, 1016
MaeIII	GTNAC	5 cut(s)	107, 540, 781, 911, 1018
MalI	GATC	7 cut(s)	27, 33, 406, 699, 810, 1006, 1014
MbiI	CCGCTC	2 cut(s)	617, 949
MboI	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
MboII	GAAGA	3 cut(s)	611, 875, 1003
MflI	RGATCY	6 cut(s)	25, 31, 404, 697, 808, 1012
MhlI	GDGCHC	1 cut(s)	1125
MluCI	AATT	3 cut(s)	63, 355, 664
MlyI	GAGTC	2 cut(s)	141, 422
MnlI	CCTC	7 cut(s)	220, 228, 343, 440, 651, 928, 1049
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	143, 1043
MspA1I	CMGCKG	2 cut(s)	198, 526
MspCI	CTTAAG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	820
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	2 cut(s)	170, 949
NdeII	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
NlaIII	CATG	4 cut(s)	271, 290, 514, 626
NlaIV	GGNNCC	3 cut(s)	810, 900, 1069
NmuCI	GTSAC	5 cut(s)	107, 540, 781, 911, 1018
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	290, 514
PaeI	GCATGC	1 cut(s)	514
PauI	GCGCGC	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	736, 845
PkrI	GCNGC	5 cut(s)	232, 576, 616, 717, 951
PleI	GAGTC	2 cut(s)	141, 421
PpsI	GAGTC	2 cut(s)	141, 421
PpuMI	RGGWCCY	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	810, 900, 1069
PspPI	GGNCC	3 cut(s)	347, 638, 1067
PspPPI	RGGWCCY	1 cut(s)	638
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	6 cut(s)	25, 31, 404, 697, 808, 1012
PteI	GCGCGC	1 cut(s)	711
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	1 cut(s)	1138
RsaNI	GTAC	1 cut(s)	1137
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	143, 1043
SatI	GCNGC	5 cut(s)	231, 575, 615, 716, 950
Sau3AI	GATC	7 cut(s)	25, 31, 404, 697, 808, 1004, 1012
Sau96I	GGNCC	3 cut(s)	347, 638, 1067
SchI	GAGTC	2 cut(s)	141, 422
SduI	GDGCHC	1 cut(s)	1125
SfaNI	GCATC	8 cut(s)	13, 121, 295, 395, 476, 544, 698, 727
SinI	GGWCC	3 cut(s)	347, 638, 1067
SmlI	CTYRAG	2 cut(s)	142, 336
SmoI	CTYRAG	2 cut(s)	142, 336
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	3 cut(s)	63, 355, 664
SsiI	CCGC	4 cut(s)	198, 615, 818, 949
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	6 cut(s)	375, 590, 605, 755, 761, 1016
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	113, 546
TaqI	TCGA	1 cut(s)	157
TasI	AATT	3 cut(s)	63, 355, 664
TauI	GCSGC	2 cut(s)	617, 952
TfiI	GAWTC	2 cut(s)	736, 845
Tru1I	TTAA	2 cut(s)	143, 1043
Tru9I	TTAA	2 cut(s)	143, 1043
TscAI	CASTG	4 cut(s)	288, 478, 831, 1138
TseFI	GTSAC	5 cut(s)	107, 540, 781, 911, 1018
TseI	GCWGC	3 cut(s)	230, 574, 715
Tsp45I	GTSAC	5 cut(s)	107, 540, 781, 911, 1018
TspDTI	ATGAA	8 cut(s)	69, 348, 611, 858, 936, 1004, 1078, 1125
TspGWI	ACGGA	3 cut(s)	357, 633, 801
TspRI	CASTG	4 cut(s)	288, 478, 831, 1138
Vha464I	CTTAAG	1 cut(s)	142
VpaK11BI	GGWCC	3 cut(s)	347, 638, 1067
XagI	CCTNNNNNAGG	2 cut(s)	906, 1090
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	2 cut(s)	290, 514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	6 cut(s)	375, 590, 605, 755, 761, 1016
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.