Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Forward (+)

56258260 .. 56258763

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGGTTAAGATGGTACTAGATATCCCGACTTTTCCGGGAGCGGCATTGTTGCTGTTATGTGTTTTCAAAGGGTATAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGGTGAGTCCAATGGAATTAGTAAAGGTAATGATCATGCAACCCCATTTAGCAAAGCTGGATTGTTCAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAAAGGTAGGGAGAAAACTCGGGAGGATGAAGATATACGAAGTTGCGAGATGAAGATCGAGCGAGAAAGTTGTCATGGGAAATTCTTGGAGCAACCGAGGAAGCAGAAACAAATTAAGCCATCTTCCCGGTCATCACTCATCGGTGTTAAAGACTATAATCCTATTCCACCGGAAGGAGATTTCACTATCTGGTTTGTTTGCTTTGTTGAAGATACTTACTACAAGTGCTGGTCCTTTGTTTCTCAATGCCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

167

Amino Acids

19.17

Weight (kDa)

7.57

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	1 - 28	3.4e-06	ABCC10 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	232, 326
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	140, 419
AgsI	TTSAA	2 cut(s)	70, 455
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	232, 326
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	2 cut(s)	39, 373
AsuHPI	GGTGA	2 cut(s)	104, 155
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	477
BccI	CCATC	3 cut(s)	7, 83, 373
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	39, 373
BfaI	CTAG	2 cut(s)	20, 111
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	39, 373
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	39, 373
BpuMI	CCSGG	2 cut(s)	39, 373
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 419
Bse8I	GATNNNNATC	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	140, 419
BshFI	GGCC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	38, 373, 416
BslI	CCNNNNNNNGG	2 cut(s)	140, 419
BsnI	GGCC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	99, 107, 172, 300
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	4 cut(s)	99, 107, 172, 300
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	102, 110, 175, 303
BstMBI	GATC	4 cut(s)	99, 107, 172, 300
BstSCI	CCNGG	2 cut(s)	37, 371
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	176, 320
CviJI	RGCY	3 cut(s)	123, 197, 364
CviKI_1	RGCY	3 cut(s)	123, 197, 364
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	4 cut(s)	101, 109, 174, 302
DpnII	GATC	4 cut(s)	99, 107, 172, 300
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	25
FaeI	CATG	2 cut(s)	179, 323
FaiI	YATR	8 cut(s)	61, 78, 84, 129, 177, 281, 321, 402
FatI	CATG	2 cut(s)	175, 319
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	20, 111
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	3 cut(s)	38, 373, 416
Hin1II	CATG	2 cut(s)	179, 323
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	3 cut(s)	38, 373, 416
HphI	GGTGA	2 cut(s)	104, 155
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	2 cut(s)	28, 266
HpyAV	CCTTC	1 cut(s)	413
HpyCH4V	TGCA	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	179, 323
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	99, 107, 172, 300
LmnI	GCTCC	2 cut(s)	41, 334
LpnPI	CCDG	6 cut(s)	51, 183, 386, 421, 429, 460
MaeI	CTAG	2 cut(s)	20, 111
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	101, 109, 174, 302
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	4 cut(s)	99, 107, 172, 300
MboII	GAAGA	5 cut(s)	98, 287, 310, 360, 467
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	4 cut(s)	156, 232, 326, 357
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	3 cut(s)	144, 262, 336
MseI	TTAA	5 cut(s)	9, 138, 230, 360, 393
MslI	CAYNNNNRTG	1 cut(s)	223
MspI	CCGG	3 cut(s)	38, 373, 416
MspR9I	CCNGG	2 cut(s)	39, 373
NciI	CCSGG	2 cut(s)	39, 373
NdeII	GATC	4 cut(s)	99, 107, 172, 300
NlaIII	CATG	2 cut(s)	179, 323
NmuCI	GTSAC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	5 cut(s)	9, 138, 230, 360, 393
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	99, 107, 172, 300
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	39, 373
SetI	ASST	3 cut(s)	169, 199, 253
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	223
Sse9I	AATT	4 cut(s)	156, 232, 326, 357
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	20, 111
StyD4I	CCNGG	2 cut(s)	37, 371
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	156, 232, 326, 357
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	5 cut(s)	9, 138, 230, 360, 393
Tru9I	TTAA	5 cut(s)	9, 138, 230, 360, 393
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	6 cut(s)	99, 225, 257, 288, 311, 488
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	232, 326
XspI	CTAG	2 cut(s)	20, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.