Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Reverse (-)

66005155 .. 66014052

Gene Structure 8898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG453000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTATGACAGCAAGCCTGATTGTTTACGCTTTTGGTCTCCCAAAGATGCACTTGCTGCTCACATCTCATGTGCAATATATTCATGCGATGGTTTGTTGGTTTATGCTACTTTTTGTGACGGTGCTGTGGGAGTTTTTGATGCTAATAGCTTAAGATTCAAATGTCGTATGGCGCCTTCTACTTATATACCATCATTTTCTCTCAGCAGTGGCAACCCCTCCTATCCTCTGGTTGTAGCAGCTCATCCATCTGAACCTAACCAGATTGCAGTTGGCATGACTGACGGATTCAAGGAGTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACCAAAGGTGATTGCATCCACTGGGAGATTTTGGCATGATTGGGACAAATCAAAGAGCATGCTATCCTTTCAGCTGAAGCAGGTTCTGTCAGAGTATCCTGATGCAGAAAAGACTATTGAGCAGCAAAATACTACTTTAGGAGAAACCTACCTAGAACTGGCCGGTGAAGAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGAAAAGAACAGCCTATTGGTGACATCTATGCTGACTCTCTCAATGGATCCGTGTCCGCATTCAGTGTTGCAAAAGACAGATGAATTAGAAAAAGTAAGTGAAGAACCTGAACTTCACTCTGACGCAAATGGGGTGGAACCTATGGGGTATAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGATTCAAGTTTATGGGAAGTCAGGAACAATACAAGAGAATATTCTCTTGGGGTTCTGGAATATGAAATAGAAGCACTTTTAGGCAAGACGCTATTACTTGTGACCCATCAAGTTGATTTCCCGCCTGCATTTGATTCTGATTTGGTTTCATCTGATCTGAGCATCACAGATCTTGATATTCCATTCAGCATAGTATTTGCTTGTGTAGCTACCATGAATGCCTATTGCAATCTAGGAGTGTTGACTGTTGTTACCTGGCAAGTCCTGTTTGTCTCCATACCAAATACCAATGGTCTGTGTCGCAATTCAGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPP4R2

Protein Analysis

364

Amino Acids

40.21

Weight (kDa)

4.59

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	523
AciI	CCGC	2 cut(s)	620, 899
AclWI	GGATC	3 cut(s)	502, 605, 618
AcoI	YGGCCR	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	160, 292, 783
AjnI	CCWGG	1 cut(s)	1031
AjuI	GAANNNNNNNTTGG	4 cut(s)	563, 595, 807, 839
AluBI	AGCT	7 cut(s)	150, 242, 409, 550, 560, 986, 1088
AluI	AGCT	7 cut(s)	150, 242, 409, 550, 560, 986, 1088
Alw26I	GTCTC	2 cut(s)	42, 1054
AlwI	GGATC	3 cut(s)	502, 605, 618
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	2 cut(s)	495, 757
ApeKI	GCWGC	4 cut(s)	56, 239, 457, 525
AspLEI	GCGC	3 cut(s)	175, 523, 525
AsuHPI	GGTGA	5 cut(s)	332, 355, 512, 595, 740
BamHI	GGATCC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	172
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
BauI	CACGAG	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	43, 251, 469, 537
BccI	CCATC	6 cut(s)	83, 199, 256, 311, 719, 891
BciT130I	CCWGG	1 cut(s)	1033
BciVI	GTATCC	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	42, 1054
BfaI	CTAG	6 cut(s)	488, 557, 563, 747, 1010, 1089
BfoI	RGCGCY	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	441
BglII	AGATCT	2 cut(s)	743, 946
BisI	GCNGC	4 cut(s)	57, 240, 458, 526
BlsI	GCNGC	4 cut(s)	58, 241, 459, 527
Bme1390I	CCNGG	1 cut(s)	1033
BmiI	GGNNCC	3 cut(s)	174, 612, 702
BmrFI	CCNGG	1 cut(s)	1033
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	7 cut(s)	37, 130, 359, 427, 508, 537, 948
BmuI	ACTGGG	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	361, 498
BseBI	CCWGG	1 cut(s)	1033
BseGI	GGATG	3 cut(s)	244, 350, 523
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	217, 926
BseNI	ACTGG	2 cut(s)	361, 498
BsePI	GCGCGC	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	43, 251, 469, 537
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	497, 759
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	42, 1054
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	2 cut(s)	622, 1000
BsnI	GGCC	2 cut(s)	497, 759
Bso31I	GGTCTC	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
BspACI	CCGC	2 cut(s)	620, 899
BspANI	GGCC	2 cut(s)	497, 759
BspCNI	CTCAG	2 cut(s)	216, 927
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	174, 612, 702
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	3 cut(s)	502, 605, 618
BspT107I	GGYRCC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	361, 498
BssAI	RCCGGY	1 cut(s)	497
BssHII	GCGCGC	1 cut(s)	521
BssMI	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
BssNI	GRCGYC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	1033
Bst4CI	ACNGT	2 cut(s)	122, 1024
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	5 cut(s)	14, 395, 523, 552, 903
BstDEI	CTNAG	2 cut(s)	203, 935
BstF5I	GGATG	3 cut(s)	244, 350, 523
BstFNI	CGCG	1 cut(s)	523
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	3 cut(s)	175, 523, 525
BstKTI	GATC	6 cut(s)	510, 613, 738, 746, 934, 949
BstMAI	GTCTC	2 cut(s)	42, 1054
BstMBI	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 983
BstNI	CCWGG	1 cut(s)	1033
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	1031
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	4 cut(s)	43, 251, 469, 537
BstX2I	RGATCY	4 cut(s)	507, 610, 743, 946
BstYI	RGATCY	4 cut(s)	507, 610, 743, 946
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	497, 759
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	244, 350, 523
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	214, 354, 633
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	5 cut(s)	14, 395, 523, 552, 903
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	3 cut(s)	175, 523, 525
Cfr10I	RCCGGY	1 cut(s)	497
CseI	GACGC	2 cut(s)	695, 874
CspCI	CAANNNNNGTGG	2 cut(s)	678, 713
CviAII	CATG	6 cut(s)	69, 84, 277, 371, 394, 991
DdeI	CTNAG	2 cut(s)	203, 935
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	6 cut(s)	509, 612, 737, 745, 933, 948
DpnII	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	1031
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
FaeI	CATG	6 cut(s)	72, 87, 280, 374, 397, 994
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	6 cut(s)	68, 83, 276, 370, 393, 990
FauI	CCCGC	1 cut(s)	906
Fnu4HI	GCNGC	4 cut(s)	57, 240, 458, 526
FokI	GGATG	3 cut(s)	231, 337, 530
Fsp4HI	GCNGC	4 cut(s)	57, 240, 458, 526
FspBI	CTAG	6 cut(s)	488, 557, 563, 747, 1010, 1089
GlaI	GCGC	3 cut(s)	174, 522, 524
GluI	GCNGC	4 cut(s)	57, 240, 458, 526
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	497, 759
HapII	CCGG	1 cut(s)	498
HgaI	GACGC	2 cut(s)	695, 874
HhaI	GCGC	3 cut(s)	175, 523, 525
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	6 cut(s)	72, 87, 280, 374, 397, 994
Hin6I	GCGC	3 cut(s)	173, 521, 523
HinP1I	GCGC	3 cut(s)	173, 521, 523
HincII	GTYRAC	1 cut(s)	1020
HindII	GTYRAC	1 cut(s)	1020
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	7 cut(s)	156, 288, 296, 538, 598, 779, 911
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	5 cut(s)	332, 355, 512, 595, 740
Hpy166II	GTNNAC	2 cut(s)	26, 1020
Hpy188I	TCNGA	7 cut(s)	253, 427, 685, 743, 916, 931, 936
Hpy188III	TCNNGA	5 cut(s)	434, 563, 799, 833, 950
Hpy8I	GTNNAC	2 cut(s)	26, 1020
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	122, 1024
HpyCH4V	TGCA	8 cut(s)	50, 74, 269, 350, 440, 634, 905, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 983
HpyF3I	CTNAG	2 cut(s)	203, 935
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	6 cut(s)	72, 87, 280, 374, 397, 994
HspAI	GCGC	3 cut(s)	173, 521, 523
KasI	GGCGCC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
Lsp1109I	GCAGC	4 cut(s)	43, 251, 469, 537
LweI	GCATC	7 cut(s)	37, 130, 359, 427, 508, 537, 948
MaeI	CTAG	6 cut(s)	488, 557, 563, 747, 1010, 1089
MaeIII	GTNAC	5 cut(s)	116, 583, 749, 877, 1027
MalI	GATC	6 cut(s)	509, 612, 737, 745, 933, 948
MboI	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
MboII	GAAGA	3 cut(s)	515, 677, 734
MflI	RGATCY	4 cut(s)	507, 610, 743, 946
MluCI	AATT	2 cut(s)	647, 1081
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	305, 592
MnlI	CCTC	4 cut(s)	229, 237, 323, 780
MseI	TTAA	2 cut(s)	152, 774
MspA1I	CMGCKG	1 cut(s)	409
MspCI	CTTAAG	1 cut(s)	151
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	1033
Mva1269I	GAATGC	2 cut(s)	622, 1000
MvaI	CCWGG	1 cut(s)	1033
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	56, 983
NarI	GGCGCC	1 cut(s)	173
NdeII	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
NlaIII	CATG	6 cut(s)	72, 87, 280, 374, 397, 994
NlaIV	GGNNCC	3 cut(s)	174, 612, 702
NmuCI	GTSAC	4 cut(s)	116, 583, 749, 877
NspI	RCATGY	1 cut(s)	397
PaeI	GCATGC	1 cut(s)	397
PauI	GCGCGC	1 cut(s)	521
PctI	GAATGC	2 cut(s)	622, 1000
PfeI	GAWTC	5 cut(s)	156, 288, 538, 779, 911
PkrI	GCNGC	4 cut(s)	58, 241, 459, 527
PleI	GAGTC	2 cut(s)	304, 592
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	2 cut(s)	304, 592
Psp6I	CCWGG	1 cut(s)	1031
PspGI	CCWGG	1 cut(s)	1031
PspN4I	GGNNCC	3 cut(s)	174, 612, 702
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	4 cut(s)	507, 610, 743, 946
PteI	GCGCGC	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	152, 774
SatI	GCNGC	4 cut(s)	57, 240, 458, 526
Sau3AI	GATC	6 cut(s)	507, 610, 735, 743, 931, 946
SchI	GAGTC	2 cut(s)	305, 592
ScrFI	CCNGG	1 cut(s)	1033
SfaNI	GCATC	7 cut(s)	37, 130, 359, 427, 508, 537, 948
SfoI	GGCGCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SphI	GCATGC	1 cut(s)	397
Sse9I	AATT	2 cut(s)	647, 1081
SsiI	CCGC	2 cut(s)	620, 899
SspDI	GGCGCC	1 cut(s)	172
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	6 cut(s)	488, 557, 563, 747, 1010, 1089
StyD4I	CCNGG	1 cut(s)	1031
TaaI	ACNGT	2 cut(s)	122, 1024
TasI	AATT	2 cut(s)	647, 1081
TfiI	GAWTC	5 cut(s)	156, 288, 538, 779, 911
Tru1I	TTAA	2 cut(s)	152, 774
Tru9I	TTAA	2 cut(s)	152, 774
TscAI	CASTG	3 cut(s)	214, 361, 633
TseFI	GTSAC	4 cut(s)	116, 583, 749, 877
TseI	GCWGC	4 cut(s)	56, 239, 457, 525
Tsp45I	GTSAC	4 cut(s)	116, 583, 749, 877
TspDTI	ATGAA	6 cut(s)	72, 660, 735, 855, 915, 1007
TspGWI	ACGGA	2 cut(s)	300, 603
TspRI	CASTG	3 cut(s)	214, 361, 633
Vha464I	CTTAAG	1 cut(s)	151
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	1 cut(s)	397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	6 cut(s)	488, 557, 563, 747, 1010, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.