Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Forward (+)

1021119 .. 1026807

Gene Structure 5689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCAGTTAAGATGGTACTAGATATCCTGACTTTTCCAGAAGCGGCATTGTTGCTGTTATGTGTTTTCAAGGGGTATAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCTCTTAATGGCGAGTCCAATGGAATTAGTAAAGGTAATGATCATGCAACCCCATTTAGCAAAGCTGGATTGTTCAGTAAAATGTCATTTTGGTGGTTAAATTCATTGATGAAAAAAGGTAGGGAGAAAACTCAAGAGGATGAAGATATACCGAAGTTGCGAGATGAAGATCGAGCAGAAAGTTGTCATGGGAAATTCTTGGAGCAACTGAGGAAGCAGAAACAAATTGAGCCATCTTCCCAGTCATCAGTGTTAAGGACTATAATCCTATTCCACTGGAAGGAGATTTCACTCTCTGGTTTGTTTGCTTTGCTGAAGATACTTACTACTAGTGCTGGTCCTGTGCTTCTCAATGCCTTCATTAGGGTTGCAAAGGGAAATGAAAGTTCCGAGCACGAAGGCAGTGGTACTTCAGGTGCAGGCTTATTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

188

Amino Acids

20.84

Weight (kDa)

6.44

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCC10_N	PF24358	1 - 28	6.4e-06	ABCC10 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	232, 326
AcuI	CTGAAG	2 cut(s)	467, 528
AfaI	GTAC	2 cut(s)	18, 541
AfiI	CCNNNNNNNGG	3 cut(s)	140, 412, 495
AgsI	TTSAA	1 cut(s)	70
AhlI	ACTAGT	1 cut(s)	461
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw21I	GWGCWC	1 cut(s)	528
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	232, 326
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	528
BccI	CCATC	3 cut(s)	7, 83, 373
BclI	TGATCA	1 cut(s)	172
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	3 cut(s)	20, 111, 462
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 412, 495
Bse1I	ACTGG	2 cut(s)	373, 413
Bse8I	GATNNNNATC	1 cut(s)	300
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	140, 412, 495
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	373, 413
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	528
BslI	CCNNNNNNNGG	3 cut(s)	140, 412, 495
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	99, 107, 172, 301
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	373, 413
BssMI	GATC	4 cut(s)	99, 107, 172, 301
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	102, 110, 175, 304
BstMBI	GATC	4 cut(s)	99, 107, 172, 301
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	387, 406, 541
Cac8I	GCNNGC	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	17, 540
CviAII	CATG	2 cut(s)	176, 320
CviJI	RGCY	4 cut(s)	123, 197, 364, 555
CviKI_1	RGCY	4 cut(s)	123, 197, 364, 555
CviQI	GTAC	2 cut(s)	17, 540
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	4 cut(s)	101, 109, 174, 303
DpnII	GATC	4 cut(s)	99, 107, 172, 301
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	467, 528
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoRV	GATATC	1 cut(s)	25
FaeI	CATG	2 cut(s)	179, 323
FaiI	YATR	8 cut(s)	61, 78, 84, 129, 177, 281, 321, 395
FatI	CATG	2 cut(s)	175, 319
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	20, 111, 462
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	179, 323
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	107, 523
Hpy188III	TCNNGA	3 cut(s)	28, 38, 266
HpyAV	CCTTC	3 cut(s)	406, 499, 524
HpyCH4V	TGCA	3 cut(s)	179, 503, 551
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	179, 323
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	99, 107, 172, 301
LmnI	GCTCC	1 cut(s)	334
MaeI	CTAG	3 cut(s)	20, 111, 462
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	101, 109, 174, 303
MboI	GATC	4 cut(s)	99, 107, 172, 301
MboII	GAAGA	5 cut(s)	98, 287, 311, 360, 460
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	4 cut(s)	156, 232, 326, 357
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	3 cut(s)	144, 262, 336
MseI	TTAA	4 cut(s)	9, 138, 230, 386
MslI	CAYNNNNRTG	1 cut(s)	223
NdeII	GATC	4 cut(s)	99, 107, 172, 301
NlaIII	CATG	2 cut(s)	179, 323
NmuCI	GTSAC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	2 cut(s)	18, 541
RsaNI	GTAC	2 cut(s)	17, 540
RseI	CAYNNNNRTG	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	9, 138, 230, 386
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	99, 107, 172, 301
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	4 cut(s)	169, 199, 253, 550
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	4 cut(s)	156, 232, 326, 357
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	20, 111, 462
TaqI	TCGA	1 cut(s)	304
TasI	AATT	4 cut(s)	156, 232, 326, 357
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	4 cut(s)	9, 138, 230, 386
Tru9I	TTAA	4 cut(s)	9, 138, 230, 386
TscAI	CASTG	3 cut(s)	387, 413, 541
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	7 cut(s)	99, 225, 257, 288, 312, 481, 528
TspRI	CASTG	3 cut(s)	387, 413, 541
VpaK11BI	GGWCC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	2 cut(s)	232, 326
XspI	CTAG	3 cut(s)	20, 111, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.