Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005255.1

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Forward (+)

65324 .. 66572

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005255.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggatccgtgtccgcattcagtgttgcaaaagacagatgaatcagaaaaagtaagtgaagaacctaaacttcactctgactcaagtggggtgaaacctatggtaggtgacagggatgaagtaatggggtataagtatgaagatggtgatgagatcatcagatctagtgacaatggcctttatacccctcttaatggtgagtccaatggaattagtaaaggtaatgatcatgcaaccccatttagcaaagctggattgtttagtaaaatgtcattttggtggttaaattcattgatgaaaaaaggtagggagaaaactcaggaggatgaagatataccgaagttgcgagatgaagatcgagcagaaagttgtcatgggatattcttggagcaactgaggaagcagaaacaaattaagccatcttcccagtcatcagtgttaaagactataatcctattccactggaaggagatttcactatctggtttgtttgctttgctgaagatacttactacaagtgctggtcctttgcttctcaatgccttcattagggttgcaaagggaaatgaaagtgtttggctccaaaaccagttggcatgcaatctgtctcttttgagcgtgagagcaccaacctcgccacaaggttcttctctagccttccgagaaaggacttcttgccttaaggataaggactttggatatgatctctttgcgtcaccgaatcgatactcaacgtttaaccgtggcagtagcactgacaatcggctcttggagagactaggactggaagtacggtcgccgggtttcaacaaggttgaaggtttgctccggggaggctttgtaatcgctgggattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

286

Amino Acids

31.86

Weight (kDa)

6.97

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclI	AACGTT	1 cut(s)	734
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	792
AfiI	CCNNNNNNNGG	4 cut(s)	104, 194, 466, 549
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	808, 818
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	612, 769
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	524
AsuC2I	CCSGG	2 cut(s)	801, 830
AsuHPI	GGTGA	5 cut(s)	103, 119, 158, 209, 708
AvaII	GGWCC	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	628
BccI	CCATC	2 cut(s)	137, 427
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	801, 830
BcoDI	GTCTC	2 cut(s)	612, 769
BfaI	CTAG	3 cut(s)	165, 653, 779
BfrI	CTTAAG	1 cut(s)	680
BglII	AGATCT	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	801, 830
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	6, 581
BmrFI	CCNGG	2 cut(s)	801, 830
BmrI	ACTGGG	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	801, 830
Bsa29I	ATCGAT	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	742, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 194, 466, 549
Bse1I	ACTGG	4 cut(s)	427, 467, 589, 789
Bse8I	GATNNNNATC	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	742, 829
BseGI	GGATG	2 cut(s)	121, 331
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	4 cut(s)	104, 194, 466, 549
BseMII	CTCAG	2 cut(s)	332, 386
BseNI	ACTGG	4 cut(s)	427, 467, 589, 789
BseYI	CCCAGC	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	797
BshFI	GGCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	724
BsiEI	CGRYCG	1 cut(s)	797
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	800, 829
BslI	CCNNNNNNNGG	4 cut(s)	104, 194, 466, 549
BsmAI	GTCTC	2 cut(s)	612, 769
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	331, 387
BspDI	ATCGAT	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	6, 581
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	680
BsrI	ACTGG	4 cut(s)	427, 467, 589, 789
BssECI	CCNNGG	2 cut(s)	742, 829
BssMI	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
Bst4CI	ACNGT	2 cut(s)	743, 795
BstAFI	CTTAAG	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	2 cut(s)	318, 395
BstDSI	CCRYGG	1 cut(s)	742
BstENI	CCTNNNNNAGG	2 cut(s)	102, 547
BstF5I	GGATG	2 cut(s)	121, 331
BstKTI	GATC	6 cut(s)	7, 156, 164, 229, 358, 706
BstMAI	GTCTC	2 cut(s)	612, 769
BstMBI	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
BstMCI	CGRYCG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	799, 828
BstX2I	RGATCY	2 cut(s)	4, 161
BstYI	RGATCY	2 cut(s)	4, 161
Bsu15I	ATCGAT	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	724
BtgI	CCRYGG	1 cut(s)	742
BtsCI	GGATG	2 cut(s)	121, 331
BtsIMutI	CAGTG	4 cut(s)	27, 441, 460, 753
Cac8I	GCNNGC	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	524
ClaI	ATCGAT	1 cut(s)	724
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	791
CviAII	CATG	3 cut(s)	230, 374, 597
CviJI	RGCY	7 cut(s)	177, 251, 418, 580, 656, 766, 837
CviKI_1	RGCY	7 cut(s)	177, 251, 418, 580, 656, 766, 837
CviQI	GTAC	1 cut(s)	791
DdeI	CTNAG	2 cut(s)	318, 395
DpnI	GATC	6 cut(s)	6, 155, 163, 228, 357, 705
DpnII	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	521
EcoNI	CCTNNNNNAGG	2 cut(s)	102, 547
FaeI	CATG	3 cut(s)	233, 377, 600
FalI	AAGNNNNNCTT	2 cut(s)	658, 690
FatI	CATG	3 cut(s)	229, 373, 596
FbaI	TGATCA	1 cut(s)	226
FokI	GGATG	2 cut(s)	128, 338
FspBI	CTAG	3 cut(s)	165, 653, 779
GsaI	CCCAGC	1 cut(s)	852
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	800, 829
HgaI	GACGC	1 cut(s)	702
Hin1II	CATG	3 cut(s)	233, 377, 600
HinfI	GANTC	4 cut(s)	41, 80, 200, 721
HpaII	CCGG	2 cut(s)	800, 829
HphI	GGTGA	5 cut(s)	103, 119, 158, 209, 708
Hpy188I	TCNGA	4 cut(s)	46, 79, 161, 662
Hpy188III	TCNNGA	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	460, 553, 667, 812
HpyCH4III	ACNGT	2 cut(s)	743, 795
HpyCH4IV	ACGT	1 cut(s)	734
HpyCH4V	TGCA	4 cut(s)	28, 233, 557, 600
HpyF3I	CTNAG	2 cut(s)	318, 395
HpySE526I	ACGT	1 cut(s)	734
Hsp92II	CATG	3 cut(s)	233, 377, 600
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
LmnI	GCTCC	3 cut(s)	388, 585, 831
MaeI	CTAG	3 cut(s)	165, 653, 779
MaeII	ACGT	1 cut(s)	734
MaeIII	GTNAC	3 cut(s)	107, 167, 714
MalI	GATC	6 cut(s)	6, 155, 163, 228, 357, 705
MboI	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
MboII	GAAGA	7 cut(s)	71, 152, 341, 365, 414, 514, 639
MflI	RGATCY	2 cut(s)	4, 161
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	3 cut(s)	210, 286, 411
MlyI	GAGTC	2 cut(s)	74, 209
MnlI	CCTC	5 cut(s)	198, 316, 390, 643, 827
MseI	TTAA	6 cut(s)	192, 284, 414, 440, 681, 738
MslI	CAYNNNNRTG	1 cut(s)	277
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	2 cut(s)	800, 829
MspR9I	CCNGG	2 cut(s)	801, 830
Mva1269I	GAATGC	1 cut(s)	16
NciI	CCSGG	2 cut(s)	801, 830
NdeII	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
NlaIII	CATG	3 cut(s)	233, 377, 600
NlaIV	GGNNCC	2 cut(s)	6, 581
NmuCI	GTSAC	3 cut(s)	107, 167, 714
NspI	RCATGY	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	600
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	41, 721
PleI	GAGTC	2 cut(s)	74, 208
PpsI	GAGTC	2 cut(s)	74, 208
Psp1406I	AACGTT	1 cut(s)	734
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	2 cut(s)	6, 581
PspPI	GGNCC	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	4, 161
RsaI	GTAC	1 cut(s)	792
RsaNI	GTAC	1 cut(s)	791
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	6 cut(s)	192, 284, 414, 440, 681, 738
Sau3AI	GATC	6 cut(s)	4, 153, 161, 226, 355, 703
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	2 cut(s)	74, 209
ScrFI	CCNGG	2 cut(s)	801, 830
SduI	GDGCHC	1 cut(s)	628
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	82, 680
SmoI	CTYRAG	2 cut(s)	82, 680
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	3 cut(s)	210, 286, 411
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	3 cut(s)	165, 653, 779
StyD4I	CCNGG	2 cut(s)	799, 828
TaaI	ACNGT	2 cut(s)	743, 795
TaiI	ACGT	1 cut(s)	737
TaqI	TCGA	2 cut(s)	358, 724
TasI	AATT	3 cut(s)	210, 286, 411
TfiI	GAWTC	2 cut(s)	41, 721
Tru1I	TTAA	6 cut(s)	192, 284, 414, 440, 681, 738
Tru9I	TTAA	6 cut(s)	192, 284, 414, 440, 681, 738
TscAI	CASTG	4 cut(s)	27, 441, 467, 760
TseFI	GTSAC	3 cut(s)	107, 167, 714
Tsp45I	GTSAC	3 cut(s)	107, 167, 714
TspDTI	ATGAA	9 cut(s)	54, 132, 153, 279, 311, 342, 366, 535, 582
TspRI	CASTG	4 cut(s)	27, 441, 467, 760
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	524
XagI	CCTNNNNNAGG	2 cut(s)	102, 547
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	600
XspI	CTAG	3 cut(s)	165, 653, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.