Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008895

Physical Location & Seq

Genomic Coordinates Forward (+)

775352 .. 779494

Gene Structure 4143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCGAATAGCGCCTTCTGCTTATATACCATCATTTTCTCTCAGATTTGCAGCGGTGGCAACCCCTCCTATTCTTTGGTTGTAGCAGCTCATCCATCTGAGCCTAACCAGATTGCAGTTGGCATGACTGAAGGGTCAGTGCATGTAGCAGCTCATCCATCTGATGCAGAGCTGAAATGGGGTGGCACACCCTCTCAAGATAACGGTCCTTCCAATTCATCAAATCCGTCTCCTAGTGGTCAAGCATCAGAACTTCCTTCCAGATCCAAGGAGTCCAAGCACGAGATTGCTGATGGTGAAGTTAGAGGCATACTAAAGATCCTATTGGATGCGCGCAGCATCTACCCGAATCTCTCAAAGCTTGCTCTAGCTCTAGCAAAGAACAGCCTATTGGTGACATCTATGCTGACTATCTCAATGGGGATGTGTCCGCATTCAGTGTTGCAGAAGACAGATGACTCAGAAAAAGTAAGTGAAGAACCTAAACTTCACTCTGACGCAAATGGGGTGGAACCTATGGTAGGTGACAGGGATGAAGTACTGGTAGAGGGGTACAAGTATGAAGATGGTGATGAGATCATCAGATCTAGTGACAATGGCCTTTATACCCCGCTTAATGGTGAGTCCAATGGAATTAGTAAAGGGTTGCAAAGGGAAATGAAAGTTCCGAGCACGAAGGCAGTGGTACTTCAGACATTTGGAGCATGCTATTTTCTCAAAATTCCGTTACATGCAAATAATGTATTCACTTTCATCTCAACTTTGCGGCTTGTCCATGGCCCCATTCGATCCATACCTGATGTTTTTGGGGTTGTCATTCAAGCCAAGGTTGCATTTACCCATATTGTGAAATTCCTTGAGGCACCTGAGCTGAAACTTCAAATGTCCGGAACTGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

301

Amino Acids

32.19

Weight (kDa)

5.72

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008895)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0383001 RchiOBHm_Chr1g0383011 RchiOBHm_Chr5g0041751 RchiOBHm_Chr5g0041761 RchiOBHm_Chr5g0041771
rosa_laevigata	RLG00000026140
rosa_multiflora	Rmu_sc0000861.1_g000032 Rmu_sc0000861.1_g000034 Rmu_sc0005255.1_g000013 Rmu_sc0005255.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038760 Rroxscaffold_4G00277700 Rroxscaffold_4G00277710
rosa_rugosa	Rorug01G0437600
rosa_samantha	Rh1AG463200 Rh1BG420300 Rh1CG408600 Rh1CG433900 Rh1DG453000 Rh5BG286300 Rh5BG286500 Rh5DG295000 Rh5DG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	862
AccII	CGCG	1 cut(s)	334
AccIII	TCCGGA	1 cut(s)	887
AciI	CCGC	4 cut(s)	54, 431, 611, 766
AclWI	GGATC	3 cut(s)	258, 313, 783
AcsI	RAATTY	2 cut(s)	720, 851
AcuI	CTGAAG	2 cut(s)	150, 674
AfaI	GTAC	3 cut(s)	540, 554, 687
AfiI	CCNNNNNNNGG	2 cut(s)	521, 617
AgsI	TTSAA	2 cut(s)	821, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	89, 152, 172, 361, 371, 871
AluI	AGCT	6 cut(s)	89, 152, 172, 361, 371, 871
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	3 cut(s)	258, 313, 783
Aor13HI	TCCGGA	1 cut(s)	887
AoxI	GGCC	2 cut(s)	598, 778
ApeKI	GCWGC	4 cut(s)	51, 86, 149, 336
ApoI	RAATTY	2 cut(s)	720, 851
AspLEI	GCGC	3 cut(s)	14, 334, 336
AspS9I	GGNCC	2 cut(s)	206, 779
AsuHPI	GGTGA	5 cut(s)	308, 406, 536, 581, 632
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	862
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	4 cut(s)	63, 98, 161, 348
BccI	CCATC	5 cut(s)	38, 103, 166, 287, 560
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	4 cut(s)	234, 368, 374, 588
BfoI	RGCGCY	1 cut(s)	15
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	5 cut(s)	52, 87, 150, 337, 767
BlsI	GCNGC	5 cut(s)	53, 88, 151, 338, 768
BmcAI	AGTACT	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 779
BmiI	GGNNCC	3 cut(s)	513, 781, 864
BmsI	GCATC	4 cut(s)	154, 254, 319, 348
BpiI	GAAGAC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	867
BpuEI	CTTGAG	2 cut(s)	180, 878
BsaJI	CCNNGG	3 cut(s)	267, 775, 825
BsaWI	WCCGGW	1 cut(s)	887
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 617
Bse1I	ACTGG	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	887
BseDI	CCNNGG	3 cut(s)	267, 775, 825
BseGI	GGATG	5 cut(s)	91, 154, 334, 429, 538
BseLI	CCNNNNNNNGG	2 cut(s)	521, 617
BseMII	CTCAG	4 cut(s)	56, 90, 474, 858
BseNI	ACTGG	1 cut(s)	546
BsePI	GCGCGC	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	63, 98, 161, 348
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	600, 780
BshNI	GGYRCC	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	674
BsiSI	CCGG	1 cut(s)	888
BslI	CCNNNNNNNGG	2 cut(s)	521, 617
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	600, 780
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp13I	TCCGGA	1 cut(s)	887
Bsp143I	GATC	5 cut(s)	263, 318, 576, 584, 788
Bsp19I	CCATGG	1 cut(s)	775
BspACI	CCGC	4 cut(s)	54, 431, 611, 766
BspANI	GGCC	2 cut(s)	600, 780
BspCNI	CTCAG	4 cut(s)	55, 91, 473, 859
BspEI	TCCGGA	1 cut(s)	887
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	3 cut(s)	513, 781, 864
BspPI	GGATC	3 cut(s)	258, 313, 783
BspT107I	GGYRCC	1 cut(s)	862
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	267, 775, 825
BssHII	GCGCGC	1 cut(s)	332
BssMI	GATC	5 cut(s)	263, 318, 576, 584, 788
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	3 cut(s)	267, 775, 825
Bst2BI	CACGAG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	334, 363, 706
BstDEI	CTNAG	4 cut(s)	42, 99, 460, 867
BstDSI	CCRYGG	1 cut(s)	775
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	5 cut(s)	91, 154, 334, 429, 538
BstFNI	CGCG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	3 cut(s)	14, 334, 336
BstKTI	GATC	5 cut(s)	266, 321, 579, 587, 791
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	5 cut(s)	263, 318, 576, 584, 788
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 57, 830
BstNSI	RCATGY	3 cut(s)	146, 708, 734
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	63, 98, 161, 348
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	3 cut(s)	263, 318, 584
BstYI	RGATCY	3 cut(s)	263, 318, 584
BsuRI	GGCC	2 cut(s)	600, 780
BtgI	CCRYGG	1 cut(s)	775
BtsCI	GGATG	5 cut(s)	91, 154, 334, 429, 538
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	3 cut(s)	144, 444, 687
Cac8I	GCNNGC	3 cut(s)	334, 363, 706
CfoI	GCGC	3 cut(s)	14, 334, 336
Cfr13I	GGNCC	2 cut(s)	206, 779
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	539, 553, 686
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	6 cut(s)	124, 143, 705, 731, 776, 900
CviQI	GTAC	3 cut(s)	539, 553, 686
DdeI	CTNAG	4 cut(s)	42, 99, 460, 867
DpnI	GATC	5 cut(s)	265, 320, 578, 586, 790
DpnII	GATC	5 cut(s)	263, 318, 576, 584, 788
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
Eco130I	CCWWGG	3 cut(s)	267, 775, 825
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	150, 674
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoT14I	CCWWGG	3 cut(s)	267, 775, 825
ErhI	CCWWGG	3 cut(s)	267, 775, 825
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	6 cut(s)	127, 146, 708, 734, 779, 903
FatI	CATG	6 cut(s)	123, 142, 704, 730, 775, 899
FauI	CCCGC	1 cut(s)	618
Fnu4HI	GCNGC	5 cut(s)	52, 87, 150, 337, 767
FokI	GGATG	5 cut(s)	78, 141, 341, 436, 545
Fsp4HI	GCNGC	5 cut(s)	52, 87, 150, 337, 767
FspBI	CTAG	4 cut(s)	234, 368, 374, 588
GlaI	GCGC	3 cut(s)	13, 333, 335
GluI	GCNGC	5 cut(s)	52, 87, 150, 337, 767
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	600, 780
HapII	CCGG	1 cut(s)	888
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	3 cut(s)	14, 334, 336
Hin1II	CATG	6 cut(s)	127, 146, 708, 734, 779, 903
Hin6I	GCGC	3 cut(s)	12, 332, 334
HinP1I	GCGC	3 cut(s)	12, 332, 334
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	272, 349, 458, 623
HpaII	CCGG	1 cut(s)	888
HphI	GGTGA	5 cut(s)	308, 406, 536, 581, 632
Hpy188I	TCNGA	9 cut(s)	45, 100, 163, 250, 463, 496, 584, 669, 693
Hpy188III	TCNNGA	3 cut(s)	197, 261, 888
HpyAV	CCTTC	5 cut(s)	25, 125, 219, 267, 670
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	9 cut(s)	51, 116, 142, 167, 445, 649, 734, 833, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 57, 830
HpyF3I	CTNAG	4 cut(s)	42, 99, 460, 867
Hsp92II	CATG	6 cut(s)	127, 146, 708, 734, 779, 903
HspAI	GCGC	3 cut(s)	12, 332, 334
Kpn2I	TCCGGA	1 cut(s)	887
Kzo9I	GATC	5 cut(s)	263, 318, 576, 584, 788
LmnI	GCTCC	1 cut(s)	701
LpnPI	CCDG	6 cut(s)	122, 274, 514, 527, 810, 879
Lsp1109I	GCAGC	4 cut(s)	63, 98, 161, 348
LweI	GCATC	4 cut(s)	154, 254, 319, 348
MaeI	CTAG	4 cut(s)	234, 368, 374, 588
MaeIII	GTNAC	4 cut(s)	394, 524, 590, 726
MalI	GATC	5 cut(s)	265, 320, 578, 586, 790
MboI	GATC	5 cut(s)	263, 318, 576, 584, 788
MboII	GAAGA	3 cut(s)	460, 488, 575
MflI	RGATCY	3 cut(s)	263, 318, 584
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	4 cut(s)	214, 633, 720, 851
MlyI	GAGTC	3 cut(s)	281, 452, 632
MnlI	CCTC	5 cut(s)	76, 202, 299, 541, 853
MroI	TCCGGA	1 cut(s)	887
MseI	TTAA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	18, 57, 830
NcoI	CCATGG	1 cut(s)	775
NdeII	GATC	5 cut(s)	263, 318, 576, 584, 788
NlaIII	CATG	6 cut(s)	127, 146, 708, 734, 779, 903
NlaIV	GGNNCC	3 cut(s)	513, 781, 864
NmuCI	GTSAC	3 cut(s)	394, 524, 590
NspI	RCATGY	3 cut(s)	146, 708, 734
PaeI	GCATGC	1 cut(s)	708
PauI	GCGCGC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	5 cut(s)	53, 88, 151, 338, 768
PleI	GAGTC	3 cut(s)	280, 452, 631
PpsI	GAGTC	3 cut(s)	280, 452, 631
PspN4I	GGNNCC	3 cut(s)	513, 781, 864
PspPI	GGNCC	2 cut(s)	206, 779
PsuI	RGATCY	3 cut(s)	263, 318, 584
PteI	GCGCGC	1 cut(s)	332
RsaI	GTAC	3 cut(s)	540, 554, 687
RsaNI	GTAC	3 cut(s)	539, 553, 686
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	5 cut(s)	52, 87, 150, 337, 767
Sau3AI	GATC	5 cut(s)	263, 318, 576, 584, 788
Sau96I	GGNCC	2 cut(s)	206, 779
ScaI	AGTACT	1 cut(s)	540
SchI	GAGTC	3 cut(s)	281, 452, 632
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	4 cut(s)	154, 254, 319, 348
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	195, 857
SmoI	CTYRAG	2 cut(s)	195, 857
SphI	GCATGC	1 cut(s)	708
Sse9I	AATT	4 cut(s)	214, 633, 720, 851
SsiI	CCGC	4 cut(s)	54, 431, 611, 766
SspMI	CTAG	4 cut(s)	234, 368, 374, 588
StyI	CCWWGG	3 cut(s)	267, 775, 825
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	787
TasI	AATT	4 cut(s)	214, 633, 720, 851
TatI	WGTACW	1 cut(s)	538
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	3 cut(s)	144, 444, 687
TseFI	GTSAC	3 cut(s)	394, 524, 590
TseI	GCWGC	4 cut(s)	51, 86, 149, 336
Tsp45I	GTSAC	3 cut(s)	394, 524, 590
TspDTI	ATGAA	5 cut(s)	207, 549, 576, 674, 742
TspGWI	ACGGA	2 cut(s)	216, 714
TspRI	CASTG	3 cut(s)	144, 444, 687
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	2 cut(s)	720, 851
XceI	RCATGY	3 cut(s)	146, 708, 734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	4 cut(s)	234, 368, 374, 588
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.