Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Forward (+)

325375 .. 325803

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTGCTTAAGGAGTTCAATGATGTTGATAAAATCTCACACGACAAGGATGCCGGTCATGAAATCAGCAGAAGAAGCCTTGCTTACGCTCATGCTCCTGCTATTTGTTTGGTCACTAGCACTGGGTACATTTACCTTTTGTTATGCTGAAGAAGATCATCCTAGTGACATCTGTTGCTTGAAATCTATTAAAGAGTCGTTGGAGGACCCTTTAAATTCCCTTGGCAATTGGAACTTTAACAACAGCACACAAGGTTTTATCTGTGAGTTTAGCGGGGTTGAGTGCGGGCACTTTCATGAGAACAAAGTCCACAACCTCAACCTCTCCAGCATAAGGCTTAAGGGCAACTTCCCTCGGGGAATCACAAACTGTACAAGCTTAGTGCAGTTAAACCTTTCCCACAATCACCTCTCTGGGCCAATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.93

Weight (kDa)

6.36

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	54 - 95	8.6e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	273, 285
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	2 cut(s)	127, 373
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflII	CTTAAG	2 cut(s)	7, 338
AgsI	TTSAA	2 cut(s)	18, 181
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	205, 416
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BfaI	CTAG	2 cut(s)	116, 162
BfrI	CTTAAG	2 cut(s)	7, 338
Bme18I	GGWCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	205, 416
BmiI	GGNNCC	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	220, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	220, 353
BseGI	GGATG	2 cut(s)	54, 157
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	273, 285
BspANI	GGCC	1 cut(s)	418
BspHI	TCATGA	2 cut(s)	57, 295
BspLI	GGNNCC	1 cut(s)	207
BspTI	CTTAAG	2 cut(s)	7, 338
BsrFI	RCCGGY	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	220, 353
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	371
BstAFI	CTTAAG	2 cut(s)	7, 338
BstAUI	TGTACA	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	54, 157
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	54, 157
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	2 cut(s)	57, 295
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	205, 416
Csp6I	GTAC	2 cut(s)	126, 372
CviAII	CATG	3 cut(s)	58, 91, 296
CviJI	RGCY	4 cut(s)	77, 337, 378, 418
CviKI_1	RGCY	4 cut(s)	77, 337, 378, 418
CviQI	GTAC	2 cut(s)	126, 372
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	61, 94, 299
FaiI	YATR	6 cut(s)	59, 92, 144, 297, 332, 427
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 332, 364
FatI	CATG	3 cut(s)	57, 90, 295
FauI	CCCGC	2 cut(s)	266, 278
FokI	GGATG	2 cut(s)	61, 144
FspBI	CTAG	2 cut(s)	116, 162
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	3 cut(s)	61, 94, 299
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	2 cut(s)	194, 360
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	58, 296
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	61, 94, 299
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	66, 107, 110, 340, 399
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	116, 162
MaeIII	GTNAC	2 cut(s)	111, 164
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	83, 161, 164
MfeI	CAATTG	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	214, 226
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	196, 326, 332, 363, 419
MseI	TTAA	6 cut(s)	8, 189, 212, 237, 339, 389
MslI	CAYNNNNRTG	2 cut(s)	162, 294
MspCI	CTTAAG	2 cut(s)	7, 338
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	61, 94, 299
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	111, 164
PagI	TCATGA	2 cut(s)	57, 295
PfeI	GAWTC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	205, 416
PspPPI	RGGWCCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	127, 373
RsaNI	GTAC	2 cut(s)	126, 372
RseI	CAYNNNNRTG	2 cut(s)	162, 294
SaqAI	TTAA	6 cut(s)	8, 189, 212, 237, 339, 389
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	205, 416
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	137, 256, 318, 324, 380, 396, 411
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	162, 294
SmlI	CTYRAG	2 cut(s)	7, 338
SmoI	CTYRAG	2 cut(s)	7, 338
Sse9I	AATT	2 cut(s)	214, 226
SsiI	CCGC	2 cut(s)	273, 285
SspMI	CTAG	2 cut(s)	116, 162
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	371
TasI	AATT	2 cut(s)	214, 226
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	6 cut(s)	8, 189, 212, 237, 339, 389
Tru9I	TTAA	6 cut(s)	8, 189, 212, 237, 339, 389
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	111, 164
Tsp45I	GTSAC	2 cut(s)	111, 164
TspDTI	ATGAA	2 cut(s)	74, 284
TspRI	CASTG	1 cut(s)	126
Vha464I	CTTAAG	2 cut(s)	7, 338
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	214
XspI	CTAG	2 cut(s)	116, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.