Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Reverse (-)

734007 .. 734978

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCCTGTCATGAAAGCAGCAGAAGAAGTCTTGCTTATGCTCATGCTTCTGCTATTTGTTTGGTCACTAGCACTGGGTACATTTACCTTTTGTTATGCTGAAGAAGGTCTTCCTAGTGACATCAGTTGCTTGAAATCTATTAAAGAGTCGTTGGAGGACCCTTTGAATTCCCTTGGCAATTGGAACTTTAACAACAGAACACAAGGTTTTATCTGCGAGTTTAGCGGGGTTGAGTGCTGGCACTTTCATGAGAACAAAGTCCTCAACCTCAACCTCTCCAGCATGGGGCTTAAGGGCAACTTCCCTCGGGGAATCACAAACTGCACAAGCTTAATGCAGTTAAACCTTTCCCACAATCACCTCTCTGGGCCAATCCCATGGGACATATCTCGTTTGCTTTACTTTGCGACCAGCCTTGATCTCTCCAACAATAACTTTTCTGGTCAAGTCCCAGAGAGCCTAGCCAACTGCAGTTTTCTTAATATACTTGGCCTTGATCACAACCGACTTACTGGTGCACTACCAACTCAACTAGGCATGCTAAACCGGATCAAGATATTTAGGGTCAATAATAATCTCTTGTCGGGGCCAATTCCTCCATTTTCCTATAGTAATTATATTACAGGGGAGAGTTTAGCAAATAACAAAGGACTCTGTGGGTTTCCTTTGGAAAGTTGCGATAACAACAAAAGGATATCATATGTTCATTCCTGCAAAGTTCCCTTCGGAATTGGTTATGCGCTTTCATTCATAGCCGTGTTTGTCTCATGTTGCGTGCCATGGGTAGAAATTAAGATGGAGACGAGGTGGATAGTATTCTCTCTACTAGAGAAGATAAACAAGAGAAAACAAGCTCATCATAATCTGATCAAATTTGGAGCTGAAAAACAGGTTTGCTTGCTCTCCTCTAGTCCTCTCTCTGTTGAATTACTTGCCTGGCTAGTTTACTCGAGTTTATTGCATTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

323

Amino Acids

36.19

Weight (kDa)

7.08

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	38 - 80	1.6e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	166, 872
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	133, 166, 926
AjnI	CCWGG	1 cut(s)	935
AluBI	AGCT	3 cut(s)	330, 854, 881
AluI	AGCT	3 cut(s)	330, 854, 881
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	769, 794
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	2 cut(s)	306, 949
AoxI	GGCC	3 cut(s)	368, 490, 587
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	166, 872
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	157, 368, 587
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	2 cut(s)	306, 949
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	1 cut(s)	740
BcgI	CGANNNNNNTGC	1 cut(s)	940
BciT130I	CCWGG	1 cut(s)	937
BclI	TGATCA	2 cut(s)	496, 867
BcoDI	GTCTC	2 cut(s)	769, 794
BfaI	CTAG	7 cut(s)	68, 114, 461, 533, 827, 909, 941
BfmI	CTRYAG	2 cut(s)	469, 607
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	937
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	306, 949
BmgT120I	GGNCC	3 cut(s)	157, 368, 587
BmiI	GGNNCC	2 cut(s)	159, 588
BmrFI	CCNGG	1 cut(s)	937
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	172, 305, 377, 779
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	78, 517
BseBI	CCWGG	1 cut(s)	937
BseDI	CCNNGG	4 cut(s)	172, 305, 377, 779
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	78, 517
BseRI	GAGGAG	1 cut(s)	895
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	3 cut(s)	370, 492, 589
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	2 cut(s)	306, 949
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	2 cut(s)	395, 434
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	769, 794
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	2 cut(s)	395, 434
BsnI	GGCC	3 cut(s)	370, 492, 589
BsoBI	CYCGRG	2 cut(s)	306, 949
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	418, 496, 549, 867
Bsp19I	CCATGG	2 cut(s)	377, 779
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	370, 492, 589
BspHI	TCATGA	2 cut(s)	9, 247
BspLI	GGNNCC	2 cut(s)	159, 588
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	78, 517
BssECI	CCNNGG	4 cut(s)	172, 305, 377, 779
BssMI	GATC	4 cut(s)	418, 496, 549, 867
BssT1I	CCWWGG	3 cut(s)	172, 377, 779
Bst2UI	CCWGG	1 cut(s)	937
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	239, 539, 776, 899
BstDSI	CCRYGG	2 cut(s)	377, 779
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	4 cut(s)	421, 499, 552, 870
BstMAI	GTCTC	2 cut(s)	769, 794
BstMBI	GATC	4 cut(s)	418, 496, 549, 867
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	937
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	935
BstSFI	CTRYAG	2 cut(s)	469, 607
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	370, 492, 589
BtgI	CCRYGG	2 cut(s)	377, 779
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	4 cut(s)	239, 539, 776, 899
CciI	TCATGA	2 cut(s)	9, 247
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	157, 368, 587
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	8 cut(s)	10, 43, 248, 283, 378, 538, 768, 780
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	4 cut(s)	420, 498, 551, 869
DpnII	GATC	4 cut(s)	418, 496, 549, 867
Eco130I	CCWWGG	3 cut(s)	172, 377, 779
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	2 cut(s)	306, 949
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	935
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	3 cut(s)	172, 377, 779
ErhI	CCWWGG	3 cut(s)	172, 377, 779
Esp3I	CGTCTC	1 cut(s)	794
FaeI	CATG	8 cut(s)	13, 46, 251, 286, 381, 541, 771, 783
FalI	AAGNNNNNCTT	6 cut(s)	18, 50, 93, 125, 284, 316
FaqI	GGGAC	2 cut(s)	395, 434
FatI	CATG	8 cut(s)	9, 42, 247, 282, 377, 537, 767, 779
FauI	CCCGC	1 cut(s)	218
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	2 cut(s)	496, 867
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	7 cut(s)	68, 114, 461, 533, 827, 909, 941
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	370, 492, 589
HapII	CCGG	1 cut(s)	547
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	8 cut(s)	13, 46, 251, 286, 381, 541, 771, 783
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	3 cut(s)	146, 312, 651
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	518, 946
Hpy188I	TCNGA	2 cut(s)	728, 867
Hpy188III	TCNNGA	3 cut(s)	10, 248, 553
Hpy8I	GTNNAC	2 cut(s)	518, 946
HpyAV	CCTTC	2 cut(s)	98, 733
HpyCH4V	TGCA	6 cut(s)	324, 337, 471, 518, 714, 961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
Hsp92II	CATG	8 cut(s)	13, 46, 251, 286, 381, 541, 771, 783
HspAI	GCGC	1 cut(s)	740
Ksp22I	TGATCA	2 cut(s)	496, 867
Kzo9I	GATC	4 cut(s)	418, 496, 549, 867
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	7 cut(s)	68, 114, 461, 533, 827, 909, 941
MaeIII	GTNAC	2 cut(s)	63, 116
MalI	GATC	4 cut(s)	420, 498, 551, 869
MboI	GATC	4 cut(s)	418, 496, 549, 867
MboII	GAAGA	4 cut(s)	35, 101, 113, 844
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	8 cut(s)	166, 178, 591, 613, 729, 789, 872, 926
MlyI	GAGTC	2 cut(s)	155, 645
MmeI	TCCRAC	2 cut(s)	132, 450
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	7 cut(s)	141, 189, 291, 332, 341, 480, 792
MslI	CAYNNNNRTG	2 cut(s)	246, 755
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	1 cut(s)	937
MunI	CAATTG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	937
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	2 cut(s)	377, 779
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	4 cut(s)	418, 496, 549, 867
NlaIII	CATG	8 cut(s)	13, 46, 251, 286, 381, 541, 771, 783
NlaIV	GGNNCC	2 cut(s)	159, 588
NmuCI	GTSAC	2 cut(s)	63, 116
NspI	RCATGY	1 cut(s)	541
PaeI	GCATGC	1 cut(s)	541
PaeR7I	CTCGAG	1 cut(s)	949
PagI	TCATGA	2 cut(s)	9, 247
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	2 cut(s)	154, 645
PpsI	GAGTC	2 cut(s)	154, 645
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	935
PspGI	CCWGG	1 cut(s)	935
PspN4I	GGNNCC	2 cut(s)	159, 588
PspPI	GGNCC	3 cut(s)	157, 368, 587
PspPPI	RGGWCCY	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	949
PstI	CTGCAG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	246, 755
SaqAI	TTAA	7 cut(s)	141, 189, 291, 332, 341, 480, 792
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	4 cut(s)	418, 496, 549, 867
Sau96I	GGNCC	3 cut(s)	157, 368, 587
SchI	GAGTC	2 cut(s)	155, 645
ScrFI	CCNGG	1 cut(s)	937
SduI	GDGCHC	1 cut(s)	520
SfcI	CTRYAG	2 cut(s)	469, 607
Sfr274I	CTCGAG	1 cut(s)	949
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	949
SmiMI	CAYNNNNRTG	2 cut(s)	246, 755
SmlI	CTYRAG	2 cut(s)	290, 949
SmoI	CTYRAG	2 cut(s)	290, 949
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	8 cut(s)	166, 178, 591, 613, 729, 789, 872, 926
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	7 cut(s)	68, 114, 461, 533, 827, 909, 941
StyD4I	CCNGG	1 cut(s)	935
StyI	CCWWGG	3 cut(s)	172, 377, 779
TaqI	TCGA	1 cut(s)	950
TasI	AATT	8 cut(s)	166, 178, 591, 613, 729, 789, 872, 926
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	7 cut(s)	141, 189, 291, 332, 341, 480, 792
Tru9I	TTAA	7 cut(s)	141, 189, 291, 332, 341, 480, 792
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	63, 116
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	63, 116
TspDTI	ATGAA	5 cut(s)	26, 236, 695, 735, 739
TspRI	CASTG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	166, 872
XceI	RCATGY	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	949
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	7 cut(s)	68, 114, 461, 533, 827, 909, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.