Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Reverse (-)

54982904 .. 54986142

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0455300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAGTATGCTGGTTCAGGTTGGGATGAACTAAGCATAGTAGGCAAGCCTTTGGATTCCTGGTCACATCAAAAACCCGAAAAGACACTTGATGAAATAAGCCATGACCTGTGCTCAGTAAGTAATGTGAAAATGCCGATTTCAGCTTTGGACCTGCGTCAGTATCTATCTCTAAGCTACTTGGATTGCTTCCTTTCGGCCTATGAAATACCTAATGGCAAAGCTTGGACTATGCAATTGTTGGATGTGGCATGTTTGCTCCTTGCGGCCAAAATGGAGGAGTTTAATGTCCCACTCTCCCTTTACAGCTATATTCCTTTCGCGGTTAAGGTTTCTAAGAAGTCAAGGAAGAGGAGAAAACTGAGTGAGAAGGAAACAGAAAATAAGCTCTCAGGAGAGCATGGTACCGTTCAGAAAGAAACTGACATCTCCAATGGTGAACAAGCAACAGATATGAGTGTAACTGAGAAGAGAAGCCTAGACACGAGTTCTAATGGGAAACAAGACGCCAGCATCCCTGGCCAACCTGATGAAGGCAAAAACTCTCTGTTGGGGACAGAAAACTTCCCGGGCAGTCAGGCACAGTTAGATCACAAAAATTCTGGTGATGCGAATGGTGTTCTTTGTTCTAGTACAGGTGACTCTTCTGGTGATGAGCAAGTAGCTGCAACTGCCGAAGTTGATTTTAAGTTATCACTCCTCACTATATTCTATGATATCCTAGCTGAGCAGAATTCATCTCCTTGCAACGATGAAAACATTGTTGGTTTCTTGAAAAGTTTGCTTGGCCAATTGAGGAATGAAAGTAGGAACTGGGGAGATACTATAGAGGATGGAGGTATGGGTCGATCAATGGACAAGGGATGGACAGGTAGAAATCTAGCAGATGCACTTGGTGAAGATGAAGCTGATGTTGTGCTCAATTTTGGACATAACAACAATGAAGAAAATCTTGGAAAAGTGGAAGGAGGTGCTGCATTTACTTCAGATAATGAGATTGATGGGAAAGAAGATTATGACAACGGGGGCCAGTCCATGAAAACTGAAACCGGAAGGGGTCCTCTAAAAAAGAAAAGACTTGTTATTGGAGATGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

366

Amino Acids

39.91

Weight (kDa)

4.65

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	55 - 99	6.2e-07	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	266, 323
AcoI	YGGCCR	3 cut(s)	267, 520, 787
AcsI	RAATTY	2 cut(s)	598, 733
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	1 cut(s)	507
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	2 cut(s)	406, 634
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	1 cut(s)	775
AjnI	CCWGG	2 cut(s)	59, 517
AjuI	GAANNNNNNNTTGG	4 cut(s)	747, 779, 936, 968
AluBI	AGCT	8 cut(s)	146, 177, 224, 309, 388, 665, 725, 908
AluI	AGCT	8 cut(s)	146, 177, 224, 309, 388, 665, 725, 908
Alw21I	GWGCWC	2 cut(s)	116, 921
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	198, 267, 520, 787, 1027
ApeKI	GCWGC	2 cut(s)	665, 974
ApoI	RAATTY	2 cut(s)	598, 733
Asp718I	GGTACC	1 cut(s)	404
AspS9I	GGNCC	3 cut(s)	151, 1027, 1058
AsuC2I	CCSGG	2 cut(s)	569, 570
AsuHPI	GGTGA	5 cut(s)	449, 617, 650, 662, 908
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	151, 1058
BalI	TGGCCA	2 cut(s)	522, 789
BanI	GGYRCC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	484
Bbv12I	GWGCWC	2 cut(s)	116, 921
BbvI	GCAGC	2 cut(s)	652, 961
BccI	CCATC	3 cut(s)	827, 858, 995
BciT130I	CCWGG	2 cut(s)	61, 519
BcnI	CCSGG	2 cut(s)	569, 570
BfaI	CTAG	4 cut(s)	479, 630, 722, 881
BfmI	CTRYAG	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	3 cut(s)	267, 666, 975
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	3 cut(s)	268, 667, 976
Bme1390I	CCNGG	4 cut(s)	61, 519, 569, 570
Bme18I	GGWCC	2 cut(s)	151, 1058
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	3 cut(s)	151, 1027, 1058
BmiI	GGNNCC	3 cut(s)	406, 1028, 1059
BmrFI	CCNGG	4 cut(s)	61, 519, 569, 570
BmrI	ACTGGG	1 cut(s)	823
BmsI	GCATC	3 cut(s)	522, 598, 877
BmuI	ACTGGG	1 cut(s)	823
BoxI	GACNNNNGTC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuMI	CCSGG	2 cut(s)	569, 570
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	517, 568
BsaWI	WCCGGW	1 cut(s)	1049
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	818, 1030
BseBI	CCWGG	2 cut(s)	61, 519
BseDI	CCNNGG	2 cut(s)	517, 568
BseGI	GGATG	5 cut(s)	31, 250, 513, 838, 869
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	5 cut(s)	129, 353, 405, 456, 717
BseNI	ACTGG	2 cut(s)	818, 1030
BseRI	GAGGAG	3 cut(s)	293, 367, 689
BseXI	GCAGC	2 cut(s)	652, 961
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	5 cut(s)	200, 269, 522, 789, 1029
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	116, 921
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	569, 1050
BslFI	GGGAC	2 cut(s)	275, 568
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	275, 568
BsnI	GGCC	5 cut(s)	200, 269, 522, 789, 1029
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	116, 921
Bsp143I	GATC	2 cut(s)	589, 848
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	2 cut(s)	266, 323
BspANI	GGCC	5 cut(s)	200, 269, 522, 789, 1029
BspCNI	CTCAG	5 cut(s)	128, 354, 404, 457, 718
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	3 cut(s)	406, 1028, 1059
BspMI	ACCTGC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	818, 1030
BssECI	CCNNGG	2 cut(s)	517, 568
BssMI	GATC	2 cut(s)	589, 848
BssNI	GRCGYC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	61, 519
Bst4CI	ACNGT	2 cut(s)	409, 585
Bst6I	CTCTTC	3 cut(s)	344, 464, 649
BstACI	GRCGYC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	47, 511
BstDEI	CTNAG	8 cut(s)	32, 115, 173, 336, 362, 391, 465, 726
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	5 cut(s)	31, 250, 513, 838, 869
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	2 cut(s)	592, 851
BstMBI	GATC	2 cut(s)	589, 848
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 519, 671
BstNI	CCWGG	2 cut(s)	61, 519
BstNSI	RCATGY	1 cut(s)	255
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	4 cut(s)	59, 517, 567, 568
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	652, 961
BsuRI	GGCC	5 cut(s)	200, 269, 522, 789, 1029
BtsCI	GGATG	5 cut(s)	31, 250, 513, 838, 869
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	47, 511
Cfr13I	GGNCC	3 cut(s)	151, 1027, 1058
Cfr9I	CCCGGG	1 cut(s)	568
CseI	GACGC	2 cut(s)	146, 515
Csp6I	GTAC	2 cut(s)	405, 633
CviAII	CATG	4 cut(s)	104, 252, 401, 1036
CviQI	GTAC	2 cut(s)	405, 633
DdeI	CTNAG	8 cut(s)	32, 115, 173, 336, 362, 391, 465, 726
DpnI	GATC	2 cut(s)	591, 850
DpnII	GATC	2 cut(s)	589, 848
DraIII	CACNNNGTG	1 cut(s)	896
EaeI	YGGCCR	3 cut(s)	267, 520, 787
Eam1104I	CTCTTC	3 cut(s)	344, 464, 649
EarI	CTCTTC	3 cut(s)	344, 464, 649
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	2 cut(s)	151, 1058
Eco57I	CTGAAG	1 cut(s)	969
Eco88I	CYCGRG	1 cut(s)	568
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	59, 517
EcoRV	GATATC	1 cut(s)	718
FaeI	CATG	4 cut(s)	107, 255, 404, 1039
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	2 cut(s)	275, 568
FatI	CATG	4 cut(s)	103, 251, 400, 1035
Fnu4HI	GCNGC	3 cut(s)	267, 666, 975
FokI	GGATG	5 cut(s)	38, 257, 500, 845, 876
Fsp4HI	GCNGC	3 cut(s)	267, 666, 975
FspBI	CTAG	4 cut(s)	479, 630, 722, 881
GluI	GCNGC	3 cut(s)	267, 666, 975
HaeIII	GGCC	5 cut(s)	200, 269, 522, 789, 1029
HapII	CCGG	2 cut(s)	569, 1050
HgaI	GACGC	2 cut(s)	146, 515
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	4 cut(s)	107, 255, 404, 1039
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	2 cut(s)	56, 641
HpaII	CCGG	2 cut(s)	569, 1050
HphI	GGTGA	5 cut(s)	449, 617, 650, 662, 908
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	2 cut(s)	414, 988
Hpy188III	TCNNGA	2 cut(s)	393, 772
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	364, 527, 959, 1047
HpyCH4III	ACNGT	2 cut(s)	409, 585
HpyCH4V	TGCA	6 cut(s)	4, 235, 668, 747, 890, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 519, 671
HpyF3I	CTNAG	8 cut(s)	32, 115, 173, 336, 362, 391, 465, 726
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	4 cut(s)	107, 255, 404, 1039
KpnI	GGTACC	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	589, 848
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	2 cut(s)	652, 961
LweI	GCATC	3 cut(s)	522, 598, 877
MaeI	CTAG	4 cut(s)	479, 630, 722, 881
MaeIII	GTNAC	3 cut(s)	63, 460, 638
MalI	GATC	2 cut(s)	591, 850
MboI	GATC	2 cut(s)	589, 848
MboII	GAAGA	6 cut(s)	361, 481, 636, 911, 956, 1022
MfeI	CAATTG	2 cut(s)	236, 791
MhlI	GDGCHC	2 cut(s)	116, 921
MlsI	TGGCCA	2 cut(s)	522, 789
MluCI	AATT	5 cut(s)	236, 598, 733, 791, 922
MluNI	TGGCCA	2 cut(s)	522, 789
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	8 cut(s)	271, 345, 710, 789, 823, 830, 962, 1071
Mox20I	TGGCCA	2 cut(s)	522, 789
MscI	TGGCCA	2 cut(s)	522, 789
MseI	TTAA	4 cut(s)	285, 327, 687, 1099
Msp20I	TGGCCA	2 cut(s)	522, 789
MspI	CCGG	2 cut(s)	569, 1050
MspR9I	CCNGG	4 cut(s)	61, 519, 569, 570
MunI	CAATTG	2 cut(s)	236, 791
MvaI	CCWGG	2 cut(s)	61, 519
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	42, 519, 671
NciI	CCSGG	2 cut(s)	569, 570
NdeII	GATC	2 cut(s)	589, 848
NlaIII	CATG	4 cut(s)	107, 255, 404, 1039
NlaIV	GGNNCC	3 cut(s)	406, 1028, 1059
NmuCI	GTSAC	2 cut(s)	63, 638
NspI	RCATGY	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	268, 667, 976
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	1058
PshAI	GACNNNNGTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	1058
Psp6I	CCWGG	2 cut(s)	59, 517
PspGI	CCWGG	2 cut(s)	59, 517
PspN4I	GGNNCC	3 cut(s)	406, 1028, 1059
PspPI	GGNCC	3 cut(s)	151, 1027, 1058
PspPPI	RGGWCCY	1 cut(s)	1058
RsaI	GTAC	2 cut(s)	406, 634
RsaNI	GTAC	2 cut(s)	405, 633
SaqAI	TTAA	4 cut(s)	285, 327, 687, 1099
SatI	GCNGC	3 cut(s)	267, 666, 975
Sau3AI	GATC	2 cut(s)	589, 848
Sau96I	GGNCC	3 cut(s)	151, 1027, 1058
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	4 cut(s)	61, 519, 569, 570
SduI	GDGCHC	2 cut(s)	116, 921
SfaNI	GCATC	3 cut(s)	522, 598, 877
SfcI	CTRYAG	1 cut(s)	825
SinI	GGWCC	2 cut(s)	151, 1058
SmaI	CCCGGG	1 cut(s)	570
Sse9I	AATT	5 cut(s)	236, 598, 733, 791, 922
SsiI	CCGC	2 cut(s)	266, 323
SspMI	CTAG	4 cut(s)	479, 630, 722, 881
StyD4I	CCNGG	4 cut(s)	59, 517, 567, 568
TaaI	ACNGT	2 cut(s)	409, 585
TaqI	TCGA	1 cut(s)	847
TasI	AATT	5 cut(s)	236, 598, 733, 791, 922
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	4 cut(s)	285, 327, 687, 1099
Tru9I	TTAA	4 cut(s)	285, 327, 687, 1099
TseFI	GTSAC	2 cut(s)	63, 638
TseI	GCWGC	2 cut(s)	665, 974
Tsp45I	GTSAC	2 cut(s)	63, 638
TspMI	CCCGGG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	151, 1058
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	2 cut(s)	598, 733
XceI	RCATGY	1 cut(s)	255
XmaI	CCCGGG	1 cut(s)	568
XspI	CTAG	4 cut(s)	479, 630, 722, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.