Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Forward (+)

322464 .. 322844

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG003500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCGGTCATGAAATCAGCAGAAGAAGCCTTGCTTACGCTCATGCTCCTGCTATTTGTTTGGTCACTAGCACTGGGTACATTTACCTTTTGTTATGCTGAAGAAGATCATCCTAGTGACATCTGTTGCTTGAAATCTATTAAAGAGTCGTTGGAGGACCCTTTAAATTCCCTTGGCAATTGGAACTTTAACAACAGCACACAAGGTTTTATCTGTGAGTTTAGCGGGGTTGAGTGCGGGCACTTTCATGAGAACAAAGTCCACAACCTCAACCTCTCCAGCATAAGGCTTAAGGGCAACTTCCCTCGGGGAATCACAAACTGTACAAGCTTAGTGCAGTTAAACCTTTCCCACAATCACCTCTCTGGGCCAATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

5.57

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	38 - 79	6.8e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	225, 237
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	2 cut(s)	79, 325
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	157, 368
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	243
BfaI	CTAG	2 cut(s)	68, 114
BfrI	CTTAAG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	157, 368
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	172, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	172, 305
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	285
BsnI	GGCC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	225, 237
BspANI	GGCC	1 cut(s)	370
BspHI	TCATGA	2 cut(s)	9, 247
BspLI	GGNNCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	172, 305
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	323
BstAFI	CTTAAG	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	2 cut(s)	9, 247
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	157, 368
Csp6I	GTAC	2 cut(s)	78, 324
CviAII	CATG	3 cut(s)	10, 43, 248
CviJI	RGCY	4 cut(s)	29, 289, 330, 370
CviKI_1	RGCY	4 cut(s)	29, 289, 330, 370
CviQI	GTAC	2 cut(s)	78, 324
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraI	TTTAAA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	13, 46, 251
FaiI	YATR	6 cut(s)	11, 44, 96, 249, 284, 379
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 284, 316
FatI	CATG	3 cut(s)	9, 42, 247
FauI	CCCGC	2 cut(s)	218, 230
FokI	GGATG	1 cut(s)	96
FspBI	CTAG	2 cut(s)	68, 114
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	13, 46, 251
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	2 cut(s)	146, 312
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	10, 248
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	3 cut(s)	13, 46, 251
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	5 cut(s)	18, 59, 62, 292, 351
MaeI	CTAG	2 cut(s)	68, 114
MaeIII	GTNAC	2 cut(s)	63, 116
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	35, 113, 116
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	166, 178
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	148, 278, 284, 315, 371
MseI	TTAA	5 cut(s)	141, 164, 189, 291, 341
MslI	CAYNNNNRTG	2 cut(s)	114, 246
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	5
MunI	CAATTG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	13, 46, 251
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	63, 116
PagI	TCATGA	2 cut(s)	9, 247
PfeI	GAWTC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	157, 368
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	79, 325
RsaNI	GTAC	2 cut(s)	78, 324
RseI	CAYNNNNRTG	2 cut(s)	114, 246
SaqAI	TTAA	5 cut(s)	141, 164, 189, 291, 341
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	157, 368
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	7 cut(s)	89, 208, 270, 276, 332, 348, 363
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	114, 246
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	166, 178
SsiI	CCGC	2 cut(s)	225, 237
SspMI	CTAG	2 cut(s)	68, 114
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	323
TasI	AATT	2 cut(s)	166, 178
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	5 cut(s)	141, 164, 189, 291, 341
Tru9I	TTAA	5 cut(s)	141, 164, 189, 291, 341
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	63, 116
Tsp45I	GTSAC	2 cut(s)	63, 116
TspDTI	ATGAA	2 cut(s)	26, 236
TspRI	CASTG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	166
XspI	CTAG	2 cut(s)	68, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.