Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Reverse (-)

598753 .. 599661

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGTTTTACAGAACTGAGTAAAGCAACTGGCAACTTCGGTTTGGACAATGTTATTGGATTTGGAAAAATGGGGACTATGTACAAGGCCAAACTTTCAAATGGTTGGTTTCTTGCAGTTAAGAAGTTGCATCATGACTCTGAACAATCTGAGAAGCAATTCATATCAGAGCTACTGGTTCTGAGCAGATTGAGGCATGTAAACTTGATTCCCCTGCTCGGATTCTGCATACAAAACAATGAGAAGCTACTTGTGTACAAATACATGTCAAACGGAAACCTCTATAATTGGTTGCACCCAGTGGCAGATGCTAATAAGATTTTGGAATGGCCTTTGAGGGTTAAAATCGCCATTGGGGTTGCAAGAGGCTTGGCATGTCTCCACCACAACACCAAGTTCCGAATAGTCCACCGCAGCCTAAGCTCAAACTGTATATTGCTTGATCGTTATTTTGAACCCAATATATCCAACTTTGGAGATGCAATCATCTCGAACCGAGGAGGAGTAAGGTTTTTGTGCTCAAGTGACAGTGAGTCAGGGCAGTTTGTTAACAGCGGTCTGTGGGAGTCAGATTTTGTGAAGAAGGATGTGTATGACTATGGAGTTGTGCTTGTTGAGCTAATCACAGGAAAGGAGCCTATAACTACTGGTTCATCAAACAGTCTGCACAAGACTTTGGTTGAATGGATTGATCATGTTTCAACTAGCTCATTCATTTTCAATGACGCCATCGATAAATATCTGATTGGGCAAGGGTTTGATGAGGAGATCATTCAGTTTCTTAAAATTGCATCTGACTGCGTTCAGCCATATCCATTTCAGAGGTCAACAATGCTTGAAGTATACAGAAGACTCGGCACAATTGGGCAGAAATATGACATTACATGTGATTCTGGATTTCTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

302

Amino Acids

34.17

Weight (kDa)

7.11

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 226	3.7e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	16 - 281	8.2e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	843
AciI	CCGC	2 cut(s)	412, 555
AcyI	GRCGYC	1 cut(s)	726
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	83, 257
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	2 cut(s)	264, 884
AgsI	TTSAA	6 cut(s)	99, 455, 683, 702, 721, 839
AhdI	GACNNNNNGTC	1 cut(s)	532
AluBI	AGCT	5 cut(s)	172, 247, 423, 619, 708
AluI	AGCT	5 cut(s)	172, 247, 423, 619, 708
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	87, 329
ApeKI	GCWGC	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	856
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	737
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	705
BisI	GCNGC	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	416
BmeRI	GACNNNNNGTC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	4 cut(s)	139, 298, 469, 800
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	856
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	4 cut(s)	34, 180, 299, 652
Bse8I	GATNNNNATC	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	8, 141, 173
BseNI	ACTGG	4 cut(s)	34, 180, 299, 652
BseRI	GAGGAG	3 cut(s)	513, 516, 779
BseXI	GCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	89, 331
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	89, 331
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp1407I	TGTACA	2 cut(s)	81, 255
Bsp143I	GATC	3 cut(s)	442, 691, 768
BspACI	CCGC	2 cut(s)	412, 555
BspANI	GGCC	2 cut(s)	89, 331
BspCNI	CTCAG	3 cut(s)	9, 142, 174
BspDI	ATCGAT	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	636
BsrGI	TGTACA	2 cut(s)	81, 255
BsrI	ACTGG	4 cut(s)	34, 180, 299, 652
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	3 cut(s)	442, 691, 768
BssNAI	GTATAC	1 cut(s)	844
BssNI	GRCGYC	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	844
Bst4CI	ACNGT	3 cut(s)	431, 530, 662
BstACI	GRCGYC	1 cut(s)	726
BstAUI	TGTACA	2 cut(s)	81, 255
BstDEI	CTNAG	4 cut(s)	17, 150, 182, 419
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	3 cut(s)	445, 694, 771
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	442, 691, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	420, 616
BstNSI	RCATGY	4 cut(s)	200, 268, 378, 888
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	856
BstZ17I	GTATAC	1 cut(s)	844
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	89, 331
BsuTUI	ATCGAT	1 cut(s)	732
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	306, 535
CciI	TCATGA	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	732
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	82, 256
CviAII	CATG	6 cut(s)	134, 197, 265, 375, 695, 885
CviQI	GTAC	2 cut(s)	82, 256
DdeI	CTNAG	4 cut(s)	17, 150, 182, 419
DpnI	GATC	3 cut(s)	444, 693, 770
DpnII	GATC	3 cut(s)	442, 691, 768
DraIII	CACNNNGTG	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	532
Eam1105I	GACNNNNNGTC	1 cut(s)	532
FaeI	CATG	6 cut(s)	137, 200, 268, 378, 698, 888
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	6 cut(s)	133, 196, 264, 374, 694, 884
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	415
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	89, 331
HgaI	GACGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	6 cut(s)	137, 200, 268, 378, 698, 888
HincII	GTYRAC	2 cut(s)	550, 828
HindII	GTYRAC	2 cut(s)	550, 828
HinfI	GANTC	7 cut(s)	137, 208, 222, 533, 566, 852, 890
HpaI	GTTAAC	1 cut(s)	550
Hpy166II	GTNNAC	6 cut(s)	202, 256, 409, 550, 828, 844
Hpy188III	TCNNGA	3 cut(s)	134, 490, 894
Hpy8I	GTNNAC	6 cut(s)	202, 256, 409, 550, 828, 844
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	3 cut(s)	431, 530, 662
HpyCH4V	TGCA	8 cut(s)	116, 130, 228, 295, 362, 482, 667, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	420, 616
HpyF3I	CTNAG	4 cut(s)	17, 150, 182, 419
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	137, 200, 268, 378, 698, 888
Ksp22I	TGATCA	1 cut(s)	691
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	442, 691, 768
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	8 cut(s)	15, 161, 227, 312, 522, 612, 633, 879
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	4 cut(s)	139, 298, 469, 800
MaeI	CTAG	1 cut(s)	705
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	3 cut(s)	444, 693, 770
MboI	GATC	3 cut(s)	442, 691, 768
MboII	GAAGA	2 cut(s)	592, 861
MfeI	CAATTG	1 cut(s)	861
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	4 cut(s)	158, 286, 786, 861
MlyI	GAGTC	4 cut(s)	131, 542, 575, 846
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	8 cut(s)	186, 290, 330, 359, 491, 494, 757, 816
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	5 cut(s)	120, 342, 549, 783, 907
MspA1I	CMGCKG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	861
MwoI	GCNNNNNNNGC	2 cut(s)	420, 616
NdeII	GATC	3 cut(s)	442, 691, 768
NlaIII	CATG	6 cut(s)	137, 200, 268, 378, 698, 888
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	4 cut(s)	200, 268, 378, 888
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	2 cut(s)	264, 884
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	208, 222, 890
PkrI	GCNGC	1 cut(s)	416
PleI	GAGTC	4 cut(s)	131, 541, 574, 846
PpsI	GAGTC	4 cut(s)	131, 541, 574, 846
PscI	ACATGT	2 cut(s)	264, 884
PspN4I	GGNNCC	1 cut(s)	636
RsaI	GTAC	2 cut(s)	83, 257
RsaNI	GTAC	2 cut(s)	82, 256
SaqAI	TTAA	5 cut(s)	120, 342, 549, 783, 907
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	3 cut(s)	442, 691, 768
SchI	GAGTC	4 cut(s)	131, 542, 575, 846
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	8 cut(s)	174, 249, 282, 425, 512, 621, 710, 827
SfaNI	GCATC	4 cut(s)	139, 298, 469, 800
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	4 cut(s)	158, 286, 786, 861
SsiI	CCGC	2 cut(s)	412, 555
SspMI	CTAG	1 cut(s)	705
TaaI	ACNGT	3 cut(s)	431, 530, 662
TaqI	TCGA	2 cut(s)	491, 732
TasI	AATT	4 cut(s)	158, 286, 786, 861
TatI	WGTACW	2 cut(s)	81, 255
TfiI	GAWTC	3 cut(s)	208, 222, 890
Tru1I	TTAA	5 cut(s)	120, 342, 549, 783, 907
Tru9I	TTAA	5 cut(s)	120, 342, 549, 783, 907
TscAI	CASTG	2 cut(s)	306, 535
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	151, 642, 703
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	306, 535
XceI	RCATGY	4 cut(s)	200, 268, 378, 888
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.