Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8126716.1

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Forward (+)

20 .. 626

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8126716.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 607 bp

atgcctgtcatgaaagcagcagaagaagtcttgcttatgctcatgcttctgctatttgtttggtcactagcactgggtacatttaccttttgttatgctgaagaaggtcttcctagtgacatcagttgcttgaaatctattaaagagtcgttggaggaccctttgaattcccttggcaattggaactttaacaacagaacacaaggttttatctgcgagtttagcggggttgagtgctggcactttcatgagaacaaagtcctcaacctcaacctctccagcatggggcttaagggcaacttccctcggggaatcacaaactgcacaagcttagtgcagttaaacctttcccacaatcacctctctgggccaatcccatgggacatatctcatttgctttactttgcgaccagccttgatctctccaacaataacttttctggtcaagtcccagagagcctagccaactgcagttttcttaatatacttggccttgatcacaaccgacttactggtgcactaccaactcaactaggcatgctaaaccggatcaagatatttagggtcaataataatctcttgtcggggccaattcctccattttcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.47

Weight (kDa)

5.82

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	133, 166
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw21I	GWGCWC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	3 cut(s)	368, 490, 587
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	157, 368, 587
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	496
BfaI	CTAG	4 cut(s)	68, 114, 461, 533
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	157, 368, 587
BmiI	GGNNCC	2 cut(s)	159, 588
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	172, 305, 377
BsaWI	WCCGGW	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	78, 517
BseDI	CCNNGG	3 cut(s)	172, 305, 377
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	78, 517
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	2 cut(s)	307, 356
BshFI	GGCC	3 cut(s)	370, 492, 589
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	2 cut(s)	395, 434
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	395, 434
BsnI	GGCC	3 cut(s)	370, 492, 589
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	418, 496, 549
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	370, 492, 589
BspHI	TCATGA	2 cut(s)	9, 247
BspLI	GGNNCC	2 cut(s)	159, 588
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	78, 517
BssECI	CCNNGG	3 cut(s)	172, 305, 377
BssMI	GATC	3 cut(s)	418, 496, 549
BssT1I	CCWWGG	2 cut(s)	172, 377
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	239, 539
BstDEI	CTNAG	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	377
BstKTI	GATC	3 cut(s)	421, 499, 552
BstMBI	GATC	3 cut(s)	418, 496, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	370, 492, 589
BtgI	CCRYGG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	239, 539
CciI	TCATGA	2 cut(s)	9, 247
Cfr13I	GGNCC	3 cut(s)	157, 368, 587
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	6 cut(s)	10, 43, 248, 283, 378, 538
CviJI	RGCY	8 cut(s)	289, 330, 370, 414, 459, 464, 492, 589
CviKI_1	RGCY	8 cut(s)	289, 330, 370, 414, 459, 464, 492, 589
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	3 cut(s)	420, 498, 551
DpnII	GATC	3 cut(s)	418, 496, 549
Eco130I	CCWWGG	2 cut(s)	172, 377
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	172, 377
ErhI	CCWWGG	2 cut(s)	172, 377
FaeI	CATG	6 cut(s)	13, 46, 251, 286, 381, 541
FalI	AAGNNNNNCTT	6 cut(s)	18, 50, 93, 125, 284, 316
FaqI	GGGAC	2 cut(s)	395, 434
FatI	CATG	6 cut(s)	9, 42, 247, 282, 377, 537
FauI	CCCGC	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	4 cut(s)	68, 114, 461, 533
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	370, 492, 589
HapII	CCGG	1 cut(s)	547
Hin1II	CATG	6 cut(s)	13, 46, 251, 286, 381, 541
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	2 cut(s)	146, 312
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188III	TCNNGA	3 cut(s)	10, 248, 553
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	324, 337, 471, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	6 cut(s)	13, 46, 251, 286, 381, 541
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	418, 496, 549
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	4 cut(s)	68, 114, 461, 533
MaeIII	GTNAC	2 cut(s)	63, 116
MalI	GATC	3 cut(s)	420, 498, 551
MboI	GATC	3 cut(s)	418, 496, 549
MboII	GAAGA	3 cut(s)	35, 101, 113
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	3 cut(s)	166, 178, 591
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	132, 450
MnlI	CCTC	7 cut(s)	148, 272, 278, 284, 315, 371, 606
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	5 cut(s)	141, 189, 291, 341, 480
MslI	CAYNNNNRTG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	547
MunI	CAATTG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	3 cut(s)	418, 496, 549
NlaIII	CATG	6 cut(s)	13, 46, 251, 286, 381, 541
NlaIV	GGNNCC	2 cut(s)	159, 588
NmuCI	GTSAC	2 cut(s)	63, 116
NspI	RCATGY	1 cut(s)	541
PaeI	GCATGC	1 cut(s)	541
PagI	TCATGA	2 cut(s)	9, 247
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	159, 588
PspPI	GGNCC	3 cut(s)	157, 368, 587
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	141, 189, 291, 341, 480
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	418, 496, 549
Sau96I	GGNCC	3 cut(s)	157, 368, 587
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	8 cut(s)	89, 109, 208, 270, 276, 332, 348, 363
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	3 cut(s)	166, 178, 591
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	4 cut(s)	68, 114, 461, 533
StyI	CCWWGG	2 cut(s)	172, 377
TasI	AATT	3 cut(s)	166, 178, 591
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	5 cut(s)	141, 189, 291, 341, 480
Tru9I	TTAA	5 cut(s)	141, 189, 291, 341, 480
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	63, 116
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	63, 116
TspDTI	ATGAA	2 cut(s)	26, 236
TspRI	CASTG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	4 cut(s)	68, 114, 461, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.