Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039558.1

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1761

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039558.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

atgcctgtcatgaaagcagcagaagaagtcttgcttatgctcatgcttctgctatttgtttggtcactagcactgggtacatttaccttttgttatgctgaagaaggtcttcctagtgacatcagttgcttgaaatctattaaagagtcgttggaggaccctttgaattcccttggcaattggaactttaacaacagaacacaaggttttatctgcgagtttagcggggttgagtgctggcactttcatgagaacaaagtcctcaacctcaacctctccagcatggggcttaagggcaacttccctcggggaatcacaaactgcacaagcttagtgcagttaaacctttcccacaatcacctctctgggccaatcccatgggacatatctcatttgctttactttgcgaccagccttgatctctccaacaataacttttctggtcaagtcccagagagcctagccaactgcagttttcttaatatacttggccttgatcacaaccgacttactggtgcactaccaactcaactaggcatgctaaaccggatcaagatatttagggtcaataataatctcttgtcggggccaattcctccattttcctatagtaattatattacaggggagagtttagcaaataacaaaggactctgtgggtttcctttggaaagttgcgaaaacaacaaaaggatatcatatgttcattcctgcaaagttcccttcggaattggttatgcgctttcattcatagccgtgtttgtctcatgttgcgtgccatgggtagaaattaagatggagacgaggtggatagtattctctctactagagaagataaacaagagaaaacaagctcatcataatctgatcaaatttggagctgaaaaacagtttggcaggtttgaaaggacaataaataaaatgagttttacagaactgagtaaagcaactggcaacttcggtttggacaatgttattggatttggaaaaatggggactatgtacaaggccaaactttcaaatggttggtttcttgcagttaagaagttgcatcatgactctgaacaatctgagaagcaattcatatcagagctactggctctgagcagattgaggcatgtaaacttgattcccctgctcggattctgcatacaaaacaatgagaagctgcttgtgtacaaatacatgtcaaacggaaacctctataattggttgcacccagtggcagatgctaataagattttggaatggcctttgagggttaaaatcgccattggggttgcaagaggcttggcatgtctccaccacaacaccaagttccgaatagtccaccgcagcctaagctcaaactgtatattgcttgatcgttattttgaacccaatatatccaactttggagatgcaatcatctcgaaccgaggaggagtaatgtttttgtgctcaagtgacagtgagtcagggcagtttgttaacagcggtctgtgggagtcagattttgtgaagaaggatgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

504

Amino Acids

56.76

Weight (kDa)

8.71

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	888
AciI	CCGC	3 cut(s)	225, 1333, 1476
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	166, 872
AcuI	CTGAAG	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	1222
AfaI	GTAC	3 cut(s)	79, 1004, 1178
AfiI	CCNNNNNNNGG	2 cut(s)	285, 1139
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	1185
AgsI	TTSAA	5 cut(s)	133, 166, 905, 1020, 1376
AhdI	GACNNNNNGTC	1 cut(s)	1453
AjuI	GAANNNNNNNTTGG	2 cut(s)	876, 908
AluBI	AGCT	6 cut(s)	330, 854, 881, 1093, 1168, 1344
AluI	AGCT	6 cut(s)	330, 854, 881, 1093, 1168, 1344
Alw21I	GWGCWC	2 cut(s)	520, 1442
Alw26I	GTCTC	3 cut(s)	769, 794, 1304
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	5 cut(s)	368, 490, 587, 1008, 1250
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	3 cut(s)	17, 1168, 1335
ApoI	RAATTY	2 cut(s)	166, 872
Asp700I	GAANNNNTTC	2 cut(s)	108, 1079
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	157, 368, 587
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	520, 1442
BbvI	GCAGC	3 cut(s)	29, 1155, 1347
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	1 cut(s)	740
BcgI	CGANNNNNNTGC	2 cut(s)	1392, 1426
BclI	TGATCA	2 cut(s)	496, 867
BcoDI	GTCTC	3 cut(s)	769, 794, 1304
BfaI	CTAG	5 cut(s)	68, 114, 461, 533, 827
BfmI	CTRYAG	2 cut(s)	469, 607
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	888
BisI	GCNGC	3 cut(s)	18, 1169, 1336
BlsI	GCNGC	3 cut(s)	19, 1170, 1337
Bme18I	GGWCC	1 cut(s)	157
BmeRI	GACNNNNNGTC	1 cut(s)	1453
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	157, 368, 587
BmiI	GGNNCC	2 cut(s)	159, 588
BmrI	ACTGGG	2 cut(s)	83, 1214
BmsI	GCATC	3 cut(s)	1060, 1219, 1390
BmuI	ACTGGG	2 cut(s)	83, 1214
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	1340
BpuEI	CTTGAG	1 cut(s)	1426
BsaJI	CCNNGG	5 cut(s)	172, 305, 377, 779, 1417
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 1139
Bse1I	ACTGG	5 cut(s)	78, 517, 955, 1101, 1220
BseDI	CCNNGG	5 cut(s)	172, 305, 377, 779, 1417
BseLI	CCNNNNNNNGG	2 cut(s)	285, 1139
BseMII	CTCAG	3 cut(s)	929, 1062, 1094
BseNI	ACTGG	5 cut(s)	78, 517, 955, 1101, 1220
BseRI	GAGGAG	2 cut(s)	1434, 1437
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	3 cut(s)	29, 1155, 1347
BsgI	GTGCAG	2 cut(s)	307, 356
BshFI	GGCC	5 cut(s)	370, 492, 589, 1010, 1252
BsiHKAI	GWGCWC	2 cut(s)	520, 1442
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	3 cut(s)	395, 434, 1009
BslI	CCNNNNNNNGG	2 cut(s)	285, 1139
BsmAI	GTCTC	3 cut(s)	769, 794, 1304
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	3 cut(s)	395, 434, 1009
BsnI	GGCC	5 cut(s)	370, 492, 589, 1010, 1252
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	520, 1442
Bsp1407I	TGTACA	2 cut(s)	1002, 1176
Bsp143I	GATC	5 cut(s)	418, 496, 549, 867, 1363
Bsp19I	CCATGG	2 cut(s)	377, 779
BspACI	CCGC	3 cut(s)	225, 1333, 1476
BspANI	GGCC	5 cut(s)	370, 492, 589, 1010, 1252
BspCNI	CTCAG	3 cut(s)	930, 1063, 1095
BspHI	TCATGA	3 cut(s)	9, 247, 1054
BspLI	GGNNCC	2 cut(s)	159, 588
BspMAI	CTGCAG	1 cut(s)	473
BspMI	ACCTGC	1 cut(s)	888
BspPI	GGATC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	290
BsrGI	TGTACA	2 cut(s)	1002, 1176
BsrI	ACTGG	5 cut(s)	78, 517, 955, 1101, 1220
BssECI	CCNNGG	5 cut(s)	172, 305, 377, 779, 1417
BssMI	GATC	5 cut(s)	418, 496, 549, 867, 1363
BssT1I	CCWWGG	3 cut(s)	172, 377, 779
Bst4CI	ACNGT	3 cut(s)	891, 1352, 1451
BstAFI	CTTAAG	1 cut(s)	290
BstAUI	TGTACA	2 cut(s)	1002, 1176
BstC8I	GCNNGC	3 cut(s)	239, 539, 776
BstDEI	CTNAG	5 cut(s)	331, 938, 1071, 1103, 1340
BstDSI	CCRYGG	2 cut(s)	377, 779
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	421, 499, 552, 870, 1366
BstMAI	GTCTC	3 cut(s)	769, 794, 1304
BstMBI	GATC	5 cut(s)	418, 496, 549, 867, 1363
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 1341
BstNSI	RCATGY	4 cut(s)	541, 1121, 1189, 1299
BstSFI	CTRYAG	2 cut(s)	469, 607
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	3 cut(s)	29, 1155, 1347
BstV2I	GAAGAC	1 cut(s)	101
BstXI	CCANNNNNNTGG	1 cut(s)	378
BsuRI	GGCC	5 cut(s)	370, 492, 589, 1010, 1252
BtgI	CCRYGG	2 cut(s)	377, 779
BtsIMutI	CAGTG	3 cut(s)	71, 1227, 1456
BveI	ACCTGC	1 cut(s)	888
Cac8I	GCNNGC	3 cut(s)	239, 539, 776
CciI	TCATGA	3 cut(s)	9, 247, 1054
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	157, 368, 587
Csp6I	GTAC	3 cut(s)	78, 1003, 1177
CviQI	GTAC	3 cut(s)	78, 1003, 1177
DdeI	CTNAG	5 cut(s)	331, 938, 1071, 1103, 1340
DpnI	GATC	5 cut(s)	420, 498, 551, 869, 1365
DpnII	GATC	5 cut(s)	418, 496, 549, 867, 1363
DraIII	CACNNNGTG	1 cut(s)	1222
DriI	GACNNNNNGTC	1 cut(s)	1453
Eam1105I	GACNNNNNGTC	1 cut(s)	1453
Eco130I	CCWWGG	3 cut(s)	172, 377, 779
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	3 cut(s)	172, 377, 779
ErhI	CCWWGG	3 cut(s)	172, 377, 779
Esp3I	CGTCTC	1 cut(s)	794
FalI	AAGNNNNNCTT	6 cut(s)	18, 50, 93, 125, 284, 316
FaqI	GGGAC	3 cut(s)	395, 434, 1009
FauI	CCCGC	1 cut(s)	218
FauNDI	CATATG	1 cut(s)	700
FbaI	TGATCA	2 cut(s)	496, 867
Fnu4HI	GCNGC	3 cut(s)	18, 1169, 1336
Fsp4HI	GCNGC	3 cut(s)	18, 1169, 1336
FspBI	CTAG	5 cut(s)	68, 114, 461, 533, 827
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	3 cut(s)	18, 1169, 1336
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	5 cut(s)	370, 492, 589, 1010, 1252
HapII	CCGG	1 cut(s)	547
HhaI	GCGC	1 cut(s)	742
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	1 cut(s)	1471
HindII	GTYRAC	1 cut(s)	1471
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	8 cut(s)	146, 312, 651, 1058, 1129, 1143, 1454, 1487
HpaI	GTTAAC	1 cut(s)	1471
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	5 cut(s)	518, 1123, 1177, 1330, 1471
Hpy188I	TCNGA	9 cut(s)	728, 867, 1063, 1072, 1090, 1104, 1142, 1322, 1492
Hpy188III	TCNNGA	5 cut(s)	10, 248, 553, 1055, 1411
Hpy8I	GTNNAC	5 cut(s)	518, 1123, 1177, 1330, 1471
HpyAV	CCTTC	3 cut(s)	98, 733, 1498
HpyCH4III	ACNGT	3 cut(s)	891, 1352, 1451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 1341
HpyF3I	CTNAG	5 cut(s)	331, 938, 1071, 1103, 1340
HspAI	GCGC	1 cut(s)	740
Ksp22I	TGATCA	2 cut(s)	496, 867
KspAI	GTTAAC	1 cut(s)	1471
Kzo9I	GATC	5 cut(s)	418, 496, 549, 867, 1363
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	3 cut(s)	29, 1155, 1347
LweI	GCATC	3 cut(s)	1060, 1219, 1390
MaeI	CTAG	5 cut(s)	68, 114, 461, 533, 827
MaeIII	GTNAC	3 cut(s)	63, 116, 1445
MalI	GATC	5 cut(s)	420, 498, 551, 869, 1365
MboI	GATC	5 cut(s)	418, 496, 549, 867, 1363
MboII	GAAGA	4 cut(s)	35, 101, 113, 844
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	520, 1442
MluCI	AATT	9 cut(s)	166, 178, 591, 613, 729, 789, 872, 1079, 1207
MlyI	GAGTC	5 cut(s)	155, 645, 1052, 1463, 1496
MmeI	TCCRAC	3 cut(s)	132, 450, 1413
MroXI	GAANNNNTTC	2 cut(s)	108, 1079
MseI	TTAA	9 cut(s)	141, 189, 291, 341, 480, 792, 1041, 1263, 1470
MslI	CAYNNNNRTG	2 cut(s)	246, 755
MspA1I	CMGCKG	1 cut(s)	1476
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	547
MunI	CAATTG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	222, 1341
NcoI	CCATGG	2 cut(s)	377, 779
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	5 cut(s)	418, 496, 549, 867, 1363
NlaIV	GGNNCC	2 cut(s)	159, 588
NmuCI	GTSAC	3 cut(s)	63, 116, 1445
NspI	RCATGY	4 cut(s)	541, 1121, 1189, 1299
PaeI	GCATGC	1 cut(s)	541
PagI	TCATGA	3 cut(s)	9, 247, 1054
PciI	ACATGT	1 cut(s)	1185
PdmI	GAANNNNTTC	2 cut(s)	108, 1079
PfeI	GAWTC	3 cut(s)	312, 1129, 1143
PkrI	GCNGC	3 cut(s)	19, 1170, 1337
PleI	GAGTC	5 cut(s)	154, 645, 1052, 1462, 1495
PpsI	GAGTC	5 cut(s)	154, 645, 1052, 1462, 1495
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	1 cut(s)	1185
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	159, 588
PspPI	GGNCC	3 cut(s)	157, 368, 587
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	473
RsaI	GTAC	3 cut(s)	79, 1004, 1178
RsaNI	GTAC	3 cut(s)	78, 1003, 1177
RseI	CAYNNNNRTG	2 cut(s)	246, 755
SaqAI	TTAA	9 cut(s)	141, 189, 291, 341, 480, 792, 1041, 1263, 1470
SatI	GCNGC	3 cut(s)	18, 1169, 1336
Sau3AI	GATC	5 cut(s)	418, 496, 549, 867, 1363
Sau96I	GGNCC	3 cut(s)	157, 368, 587
SchI	GAGTC	5 cut(s)	155, 645, 1052, 1463, 1496
SduI	GDGCHC	2 cut(s)	520, 1442
SfaNI	GCATC	3 cut(s)	1060, 1219, 1390
SfcI	CTRYAG	2 cut(s)	469, 607
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	246, 755
SmlI	CTYRAG	2 cut(s)	290, 1441
SmoI	CTYRAG	2 cut(s)	290, 1441
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	9 cut(s)	166, 178, 591, 613, 729, 789, 872, 1079, 1207
SsiI	CCGC	3 cut(s)	225, 1333, 1476
SspMI	CTAG	5 cut(s)	68, 114, 461, 533, 827
StyI	CCWWGG	3 cut(s)	172, 377, 779
TaaI	ACNGT	3 cut(s)	891, 1352, 1451
TaqI	TCGA	1 cut(s)	1412
TasI	AATT	9 cut(s)	166, 178, 591, 613, 729, 789, 872, 1079, 1207
TatI	WGTACW	2 cut(s)	1002, 1176
TfiI	GAWTC	3 cut(s)	312, 1129, 1143
Tru1I	TTAA	9 cut(s)	141, 189, 291, 341, 480, 792, 1041, 1263, 1470
Tru9I	TTAA	9 cut(s)	141, 189, 291, 341, 480, 792, 1041, 1263, 1470
TscAI	CASTG	3 cut(s)	78, 1227, 1456
TseFI	GTSAC	3 cut(s)	63, 116, 1445
TseI	GCWGC	3 cut(s)	17, 1168, 1335
Tsp45I	GTSAC	3 cut(s)	63, 116, 1445
TspDTI	ATGAA	6 cut(s)	26, 236, 695, 735, 739, 1072
TspGWI	ACGGA	1 cut(s)	1209
TspRI	CASTG	3 cut(s)	78, 1227, 1456
Vha464I	CTTAAG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	166, 872
XceI	RCATGY	4 cut(s)	541, 1121, 1189, 1299
XmnI	GAANNNNTTC	2 cut(s)	108, 1079
XspI	CTAG	5 cut(s)	68, 114, 461, 533, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.