Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Forward (+)

307658 .. 308110

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTACAAGGCCACACTTTCAAATGGTTGGTTTCTTGCGGTTAACAAGTTGCATCATGACTCTGAACAATCTGAGAAGCAATTCATATCAGAGCTACTGGCTCTGCGCAGATTGAGGCATGTTAACTTGATTCCTCAGCTCGGATTCTGCATACAAAACAATGAGAAGCTTCTTGTGTACAAATACACGTCAAACGGAAACCTCTATAATTGGTTGCACCCAGTGGCAGATGCTAATAAGATTTTGAAATGGCCTTTGAGGGTTAAGATCGCCATTGGGGTTGCAAGAGGCTCGGCATGTCTCCACCATAACACCAAGTTCCGAATAGTCCACCGCAACCTAAGCTCAAACTGTATATTGCTTGATCGTTATTTTGAACCCGGCCAATATATCCAACTTTGGAGATGCAATCATCTCGAACCGAGGAGGAGTAATGTTTTTGTGCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.64

Weight (kDa)

9.93

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 122	2.7e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 123	9.3e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
AciI	CCGC	2 cut(s)	38, 334
AcoI	YGGCCR	1 cut(s)	382
AdeI	CACNNNGTG	1 cut(s)	223
AfaI	GTAC	2 cut(s)	5, 179
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	21, 247, 377
AjiI	CACGTC	1 cut(s)	189
AluBI	AGCT	4 cut(s)	94, 139, 169, 345
AluI	AGCT	4 cut(s)	94, 139, 169, 345
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	3 cut(s)	9, 251, 382
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	4 cut(s)	273, 307, 397, 431
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	61, 220, 395
BmuI	ACTGGG	1 cut(s)	215
Bpu10I	CCTNAGC	2 cut(s)	135, 341
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	102, 221
BseDI	CCNNGG	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	63, 149
BseNI	ACTGG	2 cut(s)	102, 221
BseRI	GAGGAG	2 cut(s)	439, 442
BshFI	GGCC	3 cut(s)	11, 253, 384
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	11, 253, 384
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	2 cut(s)	3, 177
Bsp143I	GATC	2 cut(s)	267, 364
BspACI	CCGC	2 cut(s)	38, 334
BspANI	GGCC	3 cut(s)	11, 253, 384
BspCNI	CTCAG	2 cut(s)	64, 148
BspHI	TCATGA	1 cut(s)	55
BsrGI	TGTACA	2 cut(s)	3, 177
BsrI	ACTGG	2 cut(s)	102, 221
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	267, 364
Bst4CI	ACNGT	1 cut(s)	353
BstAUI	TGTACA	2 cut(s)	3, 177
BstDEI	CTNAG	3 cut(s)	72, 135, 341
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	270, 367
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	267, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNSI	RCATGY	2 cut(s)	122, 300
BstSCI	CCNGG	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	11, 253, 384
BtrI	CACGTC	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	228
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	4, 178
CviAII	CATG	3 cut(s)	56, 119, 297
CviJI	RGCY	9 cut(s)	11, 94, 101, 139, 169, 253, 291, 345, 384
CviKI_1	RGCY	9 cut(s)	11, 94, 101, 139, 169, 253, 291, 345, 384
CviQI	GTAC	2 cut(s)	4, 178
DdeI	CTNAG	3 cut(s)	72, 135, 341
DpnI	GATC	2 cut(s)	269, 366
DpnII	GATC	2 cut(s)	267, 364
DraIII	CACNNNGTG	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	382
FaeI	CATG	3 cut(s)	59, 122, 300
FaiI	YATR	9 cut(s)	57, 86, 120, 152, 207, 298, 309, 356, 390
FatI	CATG	3 cut(s)	55, 118, 296
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	11, 253, 384
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	59, 122, 300
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	2 cut(s)	43, 124
HindII	GTYRAC	2 cut(s)	43, 124
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	59, 130, 144
HpaI	GTTAAC	2 cut(s)	43, 124
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	4 cut(s)	43, 124, 178, 331
Hpy188I	TCNGA	5 cut(s)	64, 73, 91, 143, 323
Hpy188III	TCNNGA	2 cut(s)	56, 416
Hpy8I	GTNNAC	4 cut(s)	43, 124, 178, 331
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	5 cut(s)	52, 150, 217, 284, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	3 cut(s)	72, 135, 341
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	59, 122, 300
HspAI	GCGC	1 cut(s)	106
KspAI	GTTAAC	2 cut(s)	43, 124
Kzo9I	GATC	2 cut(s)	267, 364
LpnPI	CCDG	3 cut(s)	83, 234, 394
LweI	GCATC	3 cut(s)	61, 220, 395
MaeII	ACGT	1 cut(s)	188
MalI	GATC	2 cut(s)	269, 366
MboI	GATC	2 cut(s)	267, 364
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	2 cut(s)	80, 208
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	7 cut(s)	108, 144, 212, 252, 281, 417, 420
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	3 cut(s)	42, 123, 264
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	2 cut(s)	267, 364
NlaIII	CATG	3 cut(s)	59, 122, 300
NmeAIII	GCCGAG	1 cut(s)	272
NsbI	TGCGCA	1 cut(s)	107
NspI	RCATGY	2 cut(s)	122, 300
PagI	TCATGA	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	130, 144
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	5, 179
RsaNI	GTAC	2 cut(s)	4, 178
SaqAI	TTAA	3 cut(s)	42, 123, 264
Sau3AI	GATC	2 cut(s)	267, 364
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	7 cut(s)	96, 141, 171, 191, 204, 342, 347
SfaNI	GCATC	3 cut(s)	61, 220, 395
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	80, 208
SsiI	CCGC	2 cut(s)	38, 334
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	417
TasI	AATT	2 cut(s)	80, 208
TatI	WGTACW	2 cut(s)	3, 177
TfiI	GAWTC	2 cut(s)	130, 144
Tru1I	TTAA	3 cut(s)	42, 123, 264
Tru9I	TTAA	3 cut(s)	42, 123, 264
TscAI	CASTG	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	228
XceI	RCATGY	2 cut(s)	122, 300
XmnI	GAANNNNTTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.