Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Forward (+)

350910 .. 351356

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCCAACTTTGGAAATGCAATCATCTCGAACCGAGGAGGAGTAATGTTTTTGTGCTCAAGTGACAGTGAGTCCGGGCAGTATGTTAACAGCGGGCTGTGGGAGTCAGATTTTGTGAAGAAGGATGTGTATGAGTATGGAGTTGCGCTTGTTGAGCTAATCACAGGCAAGGAGCCTATAACTACTGGCTGTTCAAACAGTCTGTACAGGACTTTGGTTGAATGGATTGATCATGTTTCAACTAGCTCATTCATTTTCAATGACGCCATTGATAGACATCTAATTGGGCAAGGGTTTGATGAGGAGATCATTCAGTTCCTTAAAATTGCATGTGACTGCGTTCAGCCATATCCATTTCAGAGGTCTACAATGCTTAAAGTATACAGAAGACTCGGCACTATTGGGCAGAATTATGACATTCCATGTGATTCTGGATTTCTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.62

Weight (kDa)

4.66

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	365, 381
AciI	CCGC	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	195, 221, 240, 259
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	2 cut(s)	157, 246
AluI	AGCT	2 cut(s)	157, 246
Alw21I	GWGCWC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	51, 54, 317
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	229, 306
BspACI	CCGC	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	2 cut(s)	229, 306
BssNAI	GTATAC	1 cut(s)	382
BssNI	GRCGYC	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	68, 200
BstACI	GRCGYC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	232, 309
BstMBI	GATC	2 cut(s)	229, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	148
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	233, 330, 423
CviJI	RGCY	6 cut(s)	97, 157, 175, 189, 246, 346
CviKI_1	RGCY	6 cut(s)	97, 157, 175, 189, 246, 346
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	2 cut(s)	231, 308
DpnII	GATC	2 cut(s)	229, 306
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	236, 333, 426
FatI	CATG	3 cut(s)	232, 329, 422
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	365, 381
FokI	GGATG	1 cut(s)	137
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	147
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	236, 333, 426
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	4 cut(s)	71, 104, 390, 428
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	3 cut(s)	88, 366, 382
Hpy188I	TCNGA	3 cut(s)	109, 360, 441
Hpy188III	TCNNGA	2 cut(s)	28, 432
Hpy8I	GTNNAC	3 cut(s)	88, 366, 382
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	68, 200
HpyCH4V	TGCA	2 cut(s)	20, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	236, 333, 426
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	229, 306
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	5 cut(s)	88, 150, 171, 193, 417
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	62, 332
MalI	GATC	2 cut(s)	231, 308
MboI	GATC	2 cut(s)	229, 306
MboII	GAAGA	2 cut(s)	130, 399
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	3 cut(s)	282, 324, 409
MlyI	GAGTC	3 cut(s)	80, 113, 384
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	4 cut(s)	29, 32, 295, 354
MseI	TTAA	3 cut(s)	87, 321, 375
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	229, 306
NlaIII	CATG	3 cut(s)	236, 333, 426
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	62, 332
NspI	RCATGY	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	428
PleI	GAGTC	3 cut(s)	79, 112, 384
PpsI	GAGTC	3 cut(s)	79, 112, 384
PspN4I	GGNNCC	1 cut(s)	174
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	87, 321, 375
Sau3AI	GATC	2 cut(s)	229, 306
SchI	GAGTC	3 cut(s)	80, 113, 384
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	3 cut(s)	159, 248, 365
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	3 cut(s)	282, 324, 409
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	68, 200
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	282, 324, 409
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	87, 321, 375
Tru9I	TTAA	3 cut(s)	87, 321, 375
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	62, 332
Tsp45I	GTSAC	2 cut(s)	62, 332
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	73
XceI	RCATGY	1 cut(s)	333
XmiI	GTMKAC	2 cut(s)	365, 381
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.