Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002352.1

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Reverse (-)

62972 .. 63373

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002352.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgtttttgtgctcaagtgacagtgagtccgggcagtatgttaacagcgggctgtgggagtcagattttgtgaagaaggatgtgtatgagtatggagttgcgcttgttgagctaatcacaggcaaggagcctataactactggctgttcaaacagtctgtacaggactttggttgaatggattgatcatgtttcaactagctcattcattttcaatgacgccattgatagacatctaattgggcaagggtttgatgaggagatcattcagttccttaaaattgcatgtgactgcgttcagccatatccatttcagaggtctacaatgcttgaagtatacagaagactcggcactattgggcagaattatgacattccatgtgattctggatttctgatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

133

Amino Acids

15.1

Weight (kDa)

4.39

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	320, 336
AciI	CCGC	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	150, 176, 195, 214, 332
AhdI	GACNNNNNGTC	1 cut(s)	25
AluBI	AGCT	2 cut(s)	112, 201
AluI	AGCT	2 cut(s)	112, 201
Alw21I	GWGCWC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	14
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	231
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	184, 261
BspACI	CCGC	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	184, 261
BssNAI	GTATAC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	337
Bst4CI	ACNGT	2 cut(s)	23, 155
BstACI	GRCGYC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	187, 264
BstMBI	GATC	2 cut(s)	184, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	103
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	188, 285, 378
CviJI	RGCY	6 cut(s)	52, 112, 130, 144, 201, 301
CviKI_1	RGCY	6 cut(s)	52, 112, 130, 144, 201, 301
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	2 cut(s)	186, 263
DpnII	GATC	2 cut(s)	184, 261
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	191, 288, 381
FatI	CATG	3 cut(s)	187, 284, 377
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	320, 336
FokI	GGATG	1 cut(s)	92
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	102
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	191, 288, 381
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	4 cut(s)	26, 59, 345, 383
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	43, 321, 337
Hpy188I	TCNGA	3 cut(s)	64, 315, 396
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	3 cut(s)	43, 321, 337
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	23, 155
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	191, 288, 381
HspAI	GCGC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	184, 261
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	43, 105, 126, 148, 372
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	17, 287
MalI	GATC	2 cut(s)	186, 263
MboI	GATC	2 cut(s)	184, 261
MboII	GAAGA	2 cut(s)	85, 354
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	237, 279, 364
MlyI	GAGTC	3 cut(s)	35, 68, 339
MnlI	CCTC	2 cut(s)	250, 309
MseI	TTAA	2 cut(s)	42, 276
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	184, 261
NlaIII	CATG	3 cut(s)	191, 288, 381
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	17, 287
NspI	RCATGY	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	383
PleI	GAGTC	3 cut(s)	34, 67, 339
PpsI	GAGTC	3 cut(s)	34, 67, 339
PspN4I	GGNNCC	1 cut(s)	129
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	42, 276
Sau3AI	GATC	2 cut(s)	184, 261
SchI	GAGTC	3 cut(s)	35, 68, 339
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	3 cut(s)	114, 203, 320
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	237, 279, 364
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	23, 155
TasI	AATT	3 cut(s)	237, 279, 364
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	42, 276
Tru9I	TTAA	2 cut(s)	42, 276
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	2 cut(s)	17, 287
Tsp45I	GTSAC	2 cut(s)	17, 287
TspDTI	ATGAA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	28
XceI	RCATGY	1 cut(s)	288
XmiI	GTMKAC	2 cut(s)	320, 336
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.