Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005192

Physical Location & Seq

Genomic Coordinates Reverse (-)

599859 .. 600548

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGGCTTAAGGGCAACTTCCCTCGGGGAATCACAAACTGCACAAGCTTAGTGCAGTTAAACCTTTCCCACAATCACCTCTCTGGGCCAATCCCATGGGACATATCTCATTTGCTTTACTTTGCGACCAGCCTTGATCTCTCCAACAATAACTTTTCTGGTCAAGTGCCAGAGAGCCTAGCCAACTGCAGTTTTCTTAATATACTTGGCCTTGATCACAACCAACTTACTGGTGCACTACCAACTCAACTAGGCATGCTAAACCGGATCAAGATATTTAGGGTCAATAATAATCTCTTGTCGGGGCCAATTCCTCCATTTTCCTTTAGTTATTATATTACAGGGGAGAGTTTAGCAAATAACAAAGGACTCTGTGGGTTTCCTTTGGAAAGTTGCGATAACAACAAAAGGATATCATATGTTCATTCCTGCAAAGTTCCCTTCGGAATTGGTTATGCGCTTTCATTCATAGCCGTGTTTGTCTCATGTTGCGTGCCATGGGTAGAAATTAAGATGGAGACGAGGTGGATAGTATTCTCTCTACTAGAGAAGATAAACAAGAGAAAACAAGCTCATCATAATCTGATCAAATTTGGAGCTGAAAAACAGGTTTGCTTGCTCTCGTCTAGTCCTCTCTCTGTTGAATTACTTGCCTGGCTAGTTTACTCGAGTTTATTGCATTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

25.48

Weight (kDa)

8.62

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34860
rosa_chinensis	RchiOBHm_Chr2g0084611 RchiOBHm_Chr2g0084621 RchiOBHm_Chr2g0084631
rosa_laevigata	RLG00000015682
rosa_multiflora	Rmu_co8126716.1_g000001 Rmu_sc0002352.1_g000013 Rmu_sc0004926.1_g000012 Rmu_sc0034217.1_g000001 Rmu_sc0039558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155410
rosa_rugosa	Rorug01G0455300 Rorug01G0455400 Rorug01G0460000
rosa_samantha	Rh2AG003100 Rh2AG008000 Rh2AG008100 Rh2BG003100 Rh2BG003300 Rh2BG003400 Rh2BG009100 Rh2CG003500 Rh2CG003700 Rh2CG003800 Rh2CG009800 Rh2CG009900 Rh2DG003600 Rh2DG010200 Rh2DG010300
rosa_wichuraiana	Rw2G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	590
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	653
AluBI	AGCT	3 cut(s)	48, 572, 599
AluI	AGCT	3 cut(s)	48, 572, 599
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	487, 512
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	2 cut(s)	24, 667
AoxI	GGCC	3 cut(s)	86, 208, 305
ApaLI	GTGCAC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	86, 305
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	2 cut(s)	24, 667
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	655
BclI	TGATCA	2 cut(s)	214, 585
BcoDI	GTCTC	2 cut(s)	487, 512
BfaI	CTAG	5 cut(s)	179, 251, 545, 627, 659
BfmI	CTRYAG	1 cut(s)	187
BfrI	CTTAAG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	655
BmeT110I	CYCGRG	2 cut(s)	24, 667
BmgT120I	GGNCC	2 cut(s)	86, 305
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	655
BsaJI	CCNNGG	3 cut(s)	23, 95, 497
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	655
BseDI	CCNNGG	3 cut(s)	23, 95, 497
BseNI	ACTGG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	238
BsgI	GTGCAG	2 cut(s)	25, 74
BshFI	GGCC	3 cut(s)	88, 210, 307
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	2 cut(s)	24, 667
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	487, 512
BsmBI	CGTCTC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	88, 210, 307
BsoBI	CYCGRG	2 cut(s)	24, 667
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	136, 214, 267, 585
Bsp19I	CCATGG	2 cut(s)	95, 497
BspANI	GGCC	3 cut(s)	88, 210, 307
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	191
BspPI	GGATC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	23, 95, 497
BssMI	GATC	4 cut(s)	136, 214, 267, 585
BssT1I	CCWWGG	2 cut(s)	95, 497
Bst2UI	CCWGG	1 cut(s)	655
BstAFI	CTTAAG	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	257, 494, 617
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	2 cut(s)	95, 497
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	4 cut(s)	139, 217, 270, 588
BstMAI	GTCTC	2 cut(s)	487, 512
BstMBI	GATC	4 cut(s)	136, 214, 267, 585
BstNI	CCWGG	1 cut(s)	655
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	653
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	238
BstXI	CCANNNNNNTGG	2 cut(s)	96, 230
BsuRI	GGCC	3 cut(s)	88, 210, 307
BtgI	CCRYGG	2 cut(s)	95, 497
Cac8I	GCNNGC	3 cut(s)	257, 494, 617
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	86, 305
CviAII	CATG	4 cut(s)	96, 256, 486, 498
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	4 cut(s)	138, 216, 269, 587
DpnII	GATC	4 cut(s)	136, 214, 267, 585
Eco130I	CCWWGG	2 cut(s)	95, 497
Eco32I	GATATC	1 cut(s)	414
Eco88I	CYCGRG	2 cut(s)	24, 667
EcoRII	CCWGG	1 cut(s)	653
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	95, 497
ErhI	CCWWGG	2 cut(s)	95, 497
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	4 cut(s)	99, 259, 489, 501
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	95, 255, 485, 497
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	2 cut(s)	214, 585
FspBI	CTAG	5 cut(s)	179, 251, 545, 627, 659
GlaI	GCGC	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	88, 210, 307
HapII	CCGG	1 cut(s)	265
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	4 cut(s)	99, 259, 489, 501
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	2 cut(s)	30, 369
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	236, 664
Hpy188I	TCNGA	2 cut(s)	446, 585
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	236, 664
HpyAV	CCTTC	1 cut(s)	451
HpyCH4V	TGCA	6 cut(s)	42, 55, 189, 236, 432, 679
HpyF3I	CTNAG	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	99, 259, 489, 501
HspAI	GCGC	1 cut(s)	458
Ksp22I	TGATCA	2 cut(s)	214, 585
Kzo9I	GATC	4 cut(s)	136, 214, 267, 585
LmnI	GCTCC	1 cut(s)	596
MaeI	CTAG	5 cut(s)	179, 251, 545, 627, 659
MalI	GATC	4 cut(s)	138, 216, 269, 587
MboI	GATC	4 cut(s)	136, 214, 267, 585
MboII	GAAGA	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	5 cut(s)	309, 447, 507, 590, 644
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	33, 89, 324, 516, 642
MseI	TTAA	4 cut(s)	9, 59, 198, 510
MslI	CAYNNNNRTG	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	655
NcoI	CCATGG	2 cut(s)	95, 497
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	4 cut(s)	136, 214, 267, 585
NlaIII	CATG	4 cut(s)	99, 259, 489, 501
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	86, 305
PspXI	VCTCGAGB	1 cut(s)	667
PstI	CTGCAG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	9, 59, 198, 510
Sau3AI	GATC	4 cut(s)	136, 214, 267, 585
Sau96I	GGNCC	2 cut(s)	86, 305
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	655
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	50, 66, 81, 527, 574, 601, 612
SfcI	CTRYAG	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	667
SlaI	CTCGAG	1 cut(s)	667
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	8, 667
SmoI	CTYRAG	2 cut(s)	8, 667
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	5 cut(s)	309, 447, 507, 590, 644
SspMI	CTAG	5 cut(s)	179, 251, 545, 627, 659
StyD4I	CCNGG	1 cut(s)	653
StyI	CCWWGG	2 cut(s)	95, 497
TaqI	TCGA	1 cut(s)	668
TasI	AATT	5 cut(s)	309, 447, 507, 590, 644
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	4 cut(s)	9, 59, 198, 510
Tru9I	TTAA	4 cut(s)	9, 59, 198, 510
TspDTI	ATGAA	3 cut(s)	413, 453, 457
Vha464I	CTTAAG	1 cut(s)	8
VneI	GTGCAC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	667
XspI	CTAG	5 cut(s)	179, 251, 545, 627, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.