Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008898

Physical Location & Seq

Genomic Coordinates Forward (+)

66407835 .. 66411421

Gene Structure 3587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACGACTCGAATAGCTCTGGGAGTCGGAGCCAACTTGCTCGGTCAACACTCCGCGAGAGAAACCAGGACGCCACTGCTGACGTCGGCAATCTCGACCCTCAGGGTTTTGGCATTTGAGTTAGTGAAGAATTGTTGTGGGAGCAATTTGTTTGAGCCGGTCCTATTGGTATTTAATGTGTATGTTCCTAAAGATAGAGTTATGAACCTCCATCAAGGATACAGATTCGTGGAGTTCCGAAGTGAACAAGATGCTGATTACATAAGTTTTCCTATTCTCAAGTTATTATATAGCTCCCCGATTCCTGTTAAAGATGTTGTTTCTGACTATAAATTTGTTGTTTTGACTGCCATGCCTGCAATCAAGGTGCTTAATATGATCAAGCTTTATGGAAAGGCAATTCGTGTAAATAAGGATGGGTCTTGTTGCCAGTTACATTTGTTTTCTGTTCTTCTTAATGGTGAAATGAGAGAACCTGAAACTAGAAACTCCCGTGGATTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCTGATGCAGCTATTGAGGTGAATCTTGTTGAGTGGCTAAAAATAATGGTAGGTGCAAGAAGTATGGAGTATGATGAATGGGCCAATCACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

208

Amino Acids

23.53

Weight (kDa)

7.67

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008898)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331871 RchiOBHm_Chr2g0148651 RchiOBHm_Chr2g0148731 RchiOBHm_Chr5g0061171 RchiOBHm_Chr6g0277941
rosa_laevigata	RLG00000003434 RLG00000014192 RLG00000017787 RLG00000030135 RLG00000036316
rosa_multiflora	Rmu_co8468775.1_g000001 Rmu_sc0000048.1_g000030 Rmu_sc0004598.1_g000014 Rmu_ssc0000128.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006340 Rroxscaffold_1G00036970
rosa_rugosa	Rorug06G0025900
rosa_samantha	Rh1BG071400 Rh1CG190300 Rh2CG481700 Rh2DG488600 Rh4AG166800 Rh7BG358600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	86
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	332
AcyI	GRCGYC	2 cut(s)	71, 83
AfiI	CCNNNNNNNGG	1 cut(s)	621
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	5 cut(s)	17, 294, 385, 513, 542
AluI	AGCT	5 cut(s)	17, 294, 385, 513, 542
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspS9I	GGNCC	2 cut(s)	160, 612
AsuHPI	GGTGA	2 cut(s)	473, 562
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	2 cut(s)	219, 410
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	212
BclI	TGATCA	1 cut(s)	378
BfaI	CTAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 612
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	241, 526, 539
BpuEI	CTTGAG	1 cut(s)	263
BsaHI	GRCGYC	2 cut(s)	71, 83
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	621
BsnI	GGCC	1 cut(s)	614
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	1 cut(s)	378
BssNI	GRCGYC	2 cut(s)	71, 83
Bst2UI	CCWGG	1 cut(s)	67
BstACI	GRCGYC	2 cut(s)	71, 83
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 536
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	551
Bsu36I	CCTNAGG	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	160, 612
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	9 cut(s)	17, 32, 157, 294, 385, 513, 542, 568, 614
CviKI_1	RGCY	9 cut(s)	17, 32, 157, 294, 385, 513, 542, 568, 614
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	160
Eco81I	CCTNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	355
FatI	CATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	614
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	2 cut(s)	71, 83
Hin1II	CATG	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	6 cut(s)	7, 24, 225, 301, 518, 553
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	473, 562
Hpy166II	GTNNAC	2 cut(s)	47, 245
Hpy188I	TCNGA	4 cut(s)	29, 239, 325, 535
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	47, 245
Hpy99I	CGWCG	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	359, 539, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 536
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	2 cut(s)	71, 83
Hsp92II	CATG	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	29, 141, 299
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	3 cut(s)	241, 526, 539
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	2 cut(s)	139, 443
MluCI	AATT	4 cut(s)	130, 145, 332, 399
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	110, 218, 520, 541
MseI	TTAA	4 cut(s)	174, 309, 372, 456
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	356, 536
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	4 cut(s)	225, 301, 518, 553
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	160, 612
SaqAI	TTAA	4 cut(s)	174, 309, 372, 456
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	2 cut(s)	160, 612
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	241, 526, 539
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	4 cut(s)	130, 145, 332, 399
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	65
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	10, 95
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	4 cut(s)	130, 145, 332, 399
TfiI	GAWTC	4 cut(s)	225, 301, 518, 553
Tru1I	TTAA	4 cut(s)	174, 309, 372, 456
Tru9I	TTAA	4 cut(s)	174, 309, 372, 456
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	3 cut(s)	218, 496, 621
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	1 cut(s)	483
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.