RchiOBHm_Chr5g0061171

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008898
Physical Location & Seq
Reverse (-)
66516777 .. 66517397
621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33756

Sequence Viewer

Length: 264 bp
ATGAAGACTCGAATAGCTCCGGGAGTCGGAGCCAACTTGCTCGGTCAACACTCCGCCGAGAGAAACCAGGACGCCACTGCTGACGTCAACAATCTCGACCCTCAGGTTAGTGAAGAGTTGATGTGGGAGCTGTTTGTTCAAGCTGATCATGTTGTTAATGTGTATGTTCCCAAAGATAGAGTTACGAACCTCCATCAAGGATACGGATTTGTGGAGTTCCGAAGTGAAGAGGATGCTGATTACATAAGCAGTCAAGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

87

Amino Acids

9.69

Weight (kDa)

4.52

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 29 - 81 1.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AciI CCGC 1 cut(s) 54
AcyI GRCGYC 2 cut(s) 72, 84
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 3 cut(s) 17, 130, 143
AluI AGCT 3 cut(s) 17, 130, 143
AsuC2I CCSGG 1 cut(s) 21
AxyI CCTNAGG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 194
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 21
BfuI GTATCC 1 cut(s) 194
Bme1390I CCNGG 2 cut(s) 21, 68
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 2 cut(s) 21, 68
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 72, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 31
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 2 cut(s) 72, 84
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 108, 222
BstACI GRCGYC 2 cut(s) 72, 84
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 19, 66
BstV2I GAAGAC 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CseI GACGC 1 cut(s) 80
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 17, 32, 130, 143
CviKI_1 RGCY 4 cut(s) 17, 32, 130, 143
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 108, 222
EarI CTCTTC 2 cut(s) 108, 222
EciI GGCGGA 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 150, 165, 245
FatI CATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 145
FokI GGATG 1 cut(s) 245
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 72, 84
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 2 cut(s) 47, 88
HindII GTYRAC 2 cut(s) 47, 88
HinfI GANTC 2 cut(s) 7, 24
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 47, 88
Hpy188I TCNGA 2 cut(s) 29, 221
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 47, 88
HpyCH4IV ACGT 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 2 cut(s) 72, 84
Hsp92II CATG 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 3 cut(s) 22, 29, 127
LpnPI CCDG 4 cut(s) 33, 53, 80, 89
LweI GCATC 1 cut(s) 223
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 16, 125, 239
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 3 cut(s) 111, 200, 223
MseI TTAA 2 cut(s) 156, 262
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 21, 68
MvaI CCWGG 1 cut(s) 68
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 31
NmeAIII GCCGAG 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 19
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 156, 262
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 21, 68
SetI ASST 7 cut(s) 19, 87, 108, 132, 145, 192, 259
SfaNI GCATC 1 cut(s) 223
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 19, 66
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 10, 96
TaqII GACCGA 1 cut(s) 32
Tru1I TTAA 2 cut(s) 156, 262
Tru9I TTAA 2 cut(s) 156, 262
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 82
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.