RLG00000036316

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008898
Physical Location & Seq
Forward (+)
79102876 .. 79106033
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036316

Sequence Viewer

Length: 765 bp
ATGACGACTCGAATAGCTCCGGAAGTCGGAGCCAACTTGCTCGGTCAACACTCAGCCGAGAGAAACCAGGACGCTACTGCTTACGTCTGTAATCTCGACCCTCAGGTTAGTGAAGAATTGCTGTGGGAGCTATTTGTTCAAGCCGGTCCTGCTGTTAATGTGTATGTTCCTAAAGATAGAGTTACGAACCTCCATCAAGGATACAGATTCATGGAGTTCCGAAGTGAAGAGGATGCTGATTACATAAGTTTTCCTTTTCTCAAGTTATTATATAGCTTCCCGATTCCTGTTAATGATGTTGTTTCTGACTATAAATTTGTTGTTTTGACTGCCATGCAGGCAATCAAGGTGCTTAATATGATCAAGCTTTACAGAAAGGCAATTCGTGTAAATAAGGGCTTCCGGGAAAGCATTCTGCTTCATCTCTCTATGCCACATATCCTTGGATGTAATGATATTCTGATTGATCGTGTGAATTCTTTGATTTCGGCTTCCCAAGATAAAAAGAGCTTGGATGTAGGAGCTAATCTTTTTGTTGGAAATCTTGACCTTAGTGGATGGGATACATGCTTCTGTATGAGTGTGGTTGGAAGTGTCATTACAGCCATAGATCGCTGGCTAAAACCCGGAGGTCTTGTACTTCCTTCAAATGCAATGGATGAGGTGGACTTTTTGAGTTCATTGAAAAACGACTCAGAAAATGGACATATGGTTATTGTGATTGCTGAGGGAGCAGGACATGATCTTCTTTTAGAGAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

255

Amino Acids

28.23

Weight (kDa)

5.01

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 81 4e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 19
AcsI RAATTY 2 cut(s) 314, 475
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 140, 648, 685
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 7 cut(s) 17, 130, 276, 367, 510, 524, 759
AluI AGCT 7 cut(s) 17, 130, 276, 367, 510, 524, 759
Aor13HI TCCGGA 1 cut(s) 19
ApoI RAATTY 2 cut(s) 314, 475
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 2 cut(s) 404, 627
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 583, 615
BbvCI CCTCAGC 1 cut(s) 726
BccI CCATC 2 cut(s) 201, 552
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 2 cut(s) 194, 556
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 2 cut(s) 404, 627
BfuI GTATCC 2 cut(s) 194, 556
BglI GCCNNNNNGGC 1 cut(s) 338
Bme1390I CCNGG 3 cut(s) 68, 404, 627
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 3 cut(s) 68, 404, 627
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 404, 627
BsaJI CCNNGG 1 cut(s) 442
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 19
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 5 cut(s) 238, 452, 520, 563, 664
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 4 cut(s) 66, 116, 708, 717
BsiSI CCGG 4 cut(s) 20, 144, 403, 627
BslI CCNNNNNNNGG 1 cut(s) 26
BsmI GAATGC 1 cut(s) 411
Bsp13I TCCGGA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 360, 466, 610, 742
BspCNI CTCAG 4 cut(s) 65, 115, 707, 718
BspEI TCCGGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 4 cut(s) 360, 466, 610, 742
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 339, 617
BstDEI CTNAG 5 cut(s) 52, 102, 551, 694, 726
BstF5I GGATG 5 cut(s) 238, 452, 520, 563, 664
BstKTI GATC 4 cut(s) 363, 469, 613, 745
BstMBI GATC 4 cut(s) 360, 466, 610, 742
BstMWI GCNNNNNNNGC 4 cut(s) 127, 149, 338, 731
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 570
BstSCI CCNGG 3 cut(s) 66, 402, 625
Bsu36I CCTNAGG 1 cut(s) 102
BsuI GTATCC 2 cut(s) 194, 556
BtsCI GGATG 5 cut(s) 238, 452, 520, 563, 664
Cac8I GCNNGC 2 cut(s) 339, 617
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 638
CviAII CATG 4 cut(s) 211, 334, 567, 740
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 5 cut(s) 52, 102, 551, 694, 726
DpnI GATC 4 cut(s) 362, 468, 612, 744
DpnII GATC 4 cut(s) 360, 466, 610, 742
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 214, 337, 570, 743
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 4 cut(s) 210, 333, 566, 739
FauNDI CATATG 1 cut(s) 708
FbaI TGATCA 1 cut(s) 360
FokI GGATG 5 cut(s) 245, 459, 527, 570, 671
HapII CCGG 4 cut(s) 20, 144, 403, 627
HgaI GACGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 214, 337, 570, 743
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 4 cut(s) 7, 207, 283, 692
HpaII CCGG 4 cut(s) 20, 144, 403, 627
Hpy166II GTNNAC 2 cut(s) 47, 667
Hpy188I TCNGA 5 cut(s) 29, 221, 307, 462, 697
Hpy188III TCNNGA 4 cut(s) 20, 95, 280, 545
Hpy8I GTNNAC 2 cut(s) 47, 667
HpyAV CCTTC 1 cut(s) 654
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 337, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 149, 338, 731
HpyF3I CTNAG 5 cut(s) 52, 102, 551, 694, 726
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 4 cut(s) 214, 337, 570, 743
Kpn2I TCCGGA 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 4 cut(s) 360, 466, 610, 742
LmnI GCTCC 5 cut(s) 22, 29, 127, 521, 731
LweI GCATC 1 cut(s) 223
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 181
MalI GATC 4 cut(s) 362, 468, 612, 744
MboI GATC 4 cut(s) 360, 466, 610, 742
MboII GAAGA 3 cut(s) 125, 239, 737
MluCI AATT 4 cut(s) 116, 314, 381, 475
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 3 cut(s) 7, 517, 568
MnlI CCTC 6 cut(s) 111, 200, 223, 623, 655, 721
MroI TCCGGA 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 3 cut(s) 156, 291, 354
MspI CCGG 4 cut(s) 20, 144, 403, 627
MspR9I CCNGG 3 cut(s) 68, 404, 627
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 127, 149, 338, 731
NciI CCSGG 2 cut(s) 404, 627
NdeI CATATG 1 cut(s) 708
NdeII GATC 4 cut(s) 360, 466, 610, 742
NlaIII CATG 4 cut(s) 214, 337, 570, 743
NlaIV GGNNCC 1 cut(s) 31
NmeAIII GCCGAG 1 cut(s) 82
NspI RCATGY 1 cut(s) 570
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 207, 283
PfoI TCCNGGA 1 cut(s) 402
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
SaqAI TTAA 3 cut(s) 156, 291, 354
Sau3AI GATC 4 cut(s) 360, 466, 610, 742
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 3 cut(s) 68, 404, 627
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 4 cut(s) 116, 314, 381, 475
StyD4I CCNGG 3 cut(s) 66, 402, 625
StyI CCWWGG 1 cut(s) 442
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 10, 96
TaqII GACCGA 1 cut(s) 32
TasI AATT 4 cut(s) 116, 314, 381, 475
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 2 cut(s) 207, 283
Tru1I TTAA 3 cut(s) 156, 291, 354
Tru9I TTAA 3 cut(s) 156, 291, 354
TspDTI ATGAA 3 cut(s) 199, 410, 669
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 314, 475
XceI RCATGY 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.