Rh1BG071400

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008898
Physical Location & Seq
Forward (+)
10892009 .. 10893755
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG071400.1

Sequence Viewer

Length: 336 bp
ATGTGCGAGGTCTTCTACGACGAGGTCCCTAAAACCGCCAAGGAGCAGTCAACTGGCCGATCTCGTGGATTTGGATATTCAATGTTTGCATCAGCTGAAGATGCCAAGGTTTATTTGGAGGTTCCAAATGGCGAAGAATTGGCAGTGACCCTTCTACCATCGTGCTTTAGATCACTAGATTGTGACGTCACCTTTTTGGTGGAGATATATGATGCTAGTTATCACGATTTTGTTGGCAACATCGTCCTACTTATTATTAATTCTGCCATCAGTTTTATAGAGGAGAACAATGCAGGCAATGCTGCTACTGCTCTTATGGCTCAATTGGCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

111

Amino Acids

12.13

Weight (kDa)

4.21

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 81
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 2 cut(s) 55, 327
ApeKI GCWGC 1 cut(s) 302
AseI ATTAAT 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 25, 328
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 166, 275
BfaI CTAG 2 cut(s) 176, 216
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 25, 328
BmiI GGNNCC 3 cut(s) 27, 123, 330
BmsI GCATC 3 cut(s) 91, 98, 202
BpiI GAAGAC 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 39, 105
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 39, 105
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 2 cut(s) 57, 329
BslFI GGGAC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 11
BsnI GGCC 2 cut(s) 57, 329
Bsp143I GATC 2 cut(s) 59, 170
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 57, 329
BspLI GGNNCC 3 cut(s) 27, 123, 330
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 39, 105
BssMI GATC 2 cut(s) 59, 170
BssNI GRCGYC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 39, 105
Bst2BI CACGAG 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 62, 173
BstMBI GATC 2 cut(s) 59, 170
BstMWI GCNNNNNNNGC 5 cut(s) 101, 299, 308, 317, 326
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 4
BsuRI GGCC 2 cut(s) 57, 329
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 25, 328
CviJI RGCY 4 cut(s) 57, 95, 320, 329
CviKI_1 RGCY 4 cut(s) 57, 95, 320, 329
DpnI GATC 2 cut(s) 61, 172
DpnII GATC 2 cut(s) 59, 170
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 39, 105
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 39, 105
ErhI CCWWGG 2 cut(s) 39, 105
FaiI YATR 5 cut(s) 208, 210, 278, 317, 334
FaqI GGGAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 176, 216
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 57, 329
Hin1I GRCGYC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 89, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 299, 308, 317, 326
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 59, 170
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 39, 279
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 3 cut(s) 91, 98, 202
MaeI CTAG 2 cut(s) 176, 216
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 145, 182, 187
MalI GATC 2 cut(s) 61, 172
MboI GATC 2 cut(s) 59, 170
MboII GAAGA 3 cut(s) 4, 110, 146
MfeI CAATTG 1 cut(s) 323
MluCI AATT 3 cut(s) 137, 259, 323
MnlI CCTC 3 cut(s) 16, 112, 274
MseI TTAA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 95
MunI CAATTG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 101, 299, 308, 317, 326
NdeII GATC 2 cut(s) 59, 170
NlaIV GGNNCC 3 cut(s) 27, 123, 330
NmuCI GTSAC 3 cut(s) 145, 182, 187
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 25
PspN4I GGNNCC 3 cut(s) 27, 123, 330
PspPI GGNCC 2 cut(s) 25, 328
PspPPI RGGWCCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 59, 170
Sau96I GGNCC 2 cut(s) 25, 328
SetI ASST 7 cut(s) 12, 27, 97, 111, 123, 189, 194
SfaNI GCATC 3 cut(s) 91, 98, 202
SinI GGWCC 1 cut(s) 25
Sse9I AATT 3 cut(s) 137, 259, 323
SsiI CCGC 1 cut(s) 36
SspMI CTAG 2 cut(s) 176, 216
StyI CCWWGG 2 cut(s) 39, 105
TaiI ACGT 1 cut(s) 189
TasI AATT 3 cut(s) 137, 259, 323
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 3 cut(s) 145, 182, 187
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 3 cut(s) 145, 182, 187
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 25
VspI ATTAAT 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XspI CTAG 2 cut(s) 176, 216
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.