Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008898

Physical Location & Seq

Genomic Coordinates Reverse (-)

48385717 .. 48388717

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACGACACGAATAGCTCTGGGAGTCGGAGCCAACTTGCTCGGTCAACACTCAGCCGAGAGAAACCAGGACGCCACTGCTTACGTCTGTAATCTCGACCCTCAGGTTAGTGAAGAATTGCTGTGGGAGCTATTTGTTCAAGCCGGTCCTGCTGGTATCTCCCCGATTCCTGTTAAAGATGTTGTTTCTGACTATAAATTTGTTGTTTTGACTGCCATGCCGGCAATCAAGATGCTTAATATGATCAAGCTTTACAGAAAGGCAATTCCTGTAAATAAGTGTGGTTGGAAGTGGCATTACAGCCATAGATCGCTGGCTAAAACCCGGAGGTCTTGTACTTCCTTCAAATGCAATGGTTTCATAGCTATGTATGCTACACTTGCCAGTCGCGATGTGGACTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

9.28

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008898)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331871 RchiOBHm_Chr2g0148651 RchiOBHm_Chr2g0148731 RchiOBHm_Chr5g0061171 RchiOBHm_Chr6g0277941
rosa_laevigata	RLG00000003434 RLG00000014192 RLG00000017787 RLG00000030135 RLG00000036316
rosa_multiflora	Rmu_co8468775.1_g000001 Rmu_sc0000048.1_g000030 Rmu_sc0004598.1_g000014 Rmu_ssc0000128.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006340 Rroxscaffold_1G00036970
rosa_rugosa	Rorug06G0025900
rosa_samantha	Rh1BG071400 Rh1CG190300 Rh2CG481700 Rh2DG488600 Rh4AG166800 Rh7BG358600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	140, 346
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	4 cut(s)	17, 130, 250, 365
AluI	AGCT	4 cut(s)	17, 130, 250, 365
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	68, 325
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	68, 325
BmsI	GCATC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse118I	RCCGGY	2 cut(s)	143, 220
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	66, 116
BseNI	ACTGG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	390
BsiSI	CCGG	3 cut(s)	144, 221, 325
Bsp143I	GATC	2 cut(s)	243, 308
Bsp68I	TCGCGA	1 cut(s)	390
BspCNI	CTCAG	2 cut(s)	65, 115
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	358
BsrFI	RCCGGY	2 cut(s)	143, 220
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	2 cut(s)	143, 220
BssMI	GATC	2 cut(s)	243, 308
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	222, 315
BstDEI	CTNAG	2 cut(s)	52, 102
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	246, 311
BstMBI	GATC	2 cut(s)	243, 308
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 149, 221, 371, 380
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	66, 323
BstUI	CGCG	1 cut(s)	390
Bsu36I	CCTNAGG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	222, 315
Cfr10I	RCCGGY	2 cut(s)	143, 220
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	9 cut(s)	17, 32, 56, 130, 143, 250, 303, 317, 365
CviKI_1	RGCY	9 cut(s)	17, 32, 56, 130, 143, 250, 303, 317, 365
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	2 cut(s)	52, 102
DpnI	GATC	2 cut(s)	245, 310
DpnII	GATC	2 cut(s)	243, 308
Eco47I	GGWCC	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	220
FaiI	YATR	8 cut(s)	195, 218, 242, 306, 362, 368, 372, 402
FatI	CATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	243
HapII	CCGG	3 cut(s)	144, 221, 325
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	24, 166
HpaII	CCGG	3 cut(s)	144, 221, 325
Hpy166II	GTNNAC	2 cut(s)	47, 397
Hpy188I	TCNGA	2 cut(s)	29, 190
Hpy188III	TCNNGA	3 cut(s)	95, 229, 389
Hpy8I	GTNNAC	2 cut(s)	47, 397
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 149, 221, 371, 380
HpyF3I	CTNAG	2 cut(s)	52, 102
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	243, 308
LmnI	GCTCC	2 cut(s)	29, 127
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	245, 310
MboI	GATC	2 cut(s)	243, 308
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	3 cut(s)	116, 197, 264
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	2 cut(s)	7, 266
MnlI	CCTC	2 cut(s)	111, 321
MroNI	GCCGGC	1 cut(s)	220
MseI	TTAA	2 cut(s)	174, 237
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	3 cut(s)	144, 221, 325
MspR9I	CCNGG	2 cut(s)	68, 325
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	5 cut(s)	127, 149, 221, 371, 380
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	2 cut(s)	243, 308
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	82
NruI	TCGCGA	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	146
RruI	TCGCGA	1 cut(s)	390
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	174, 237
Sau3AI	GATC	2 cut(s)	243, 308
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	68, 325
SetI	ASST	7 cut(s)	19, 87, 108, 132, 252, 332, 367
SfaNI	GCATC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	116, 197, 264
StyD4I	CCNGG	2 cut(s)	66, 323
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	3 cut(s)	116, 197, 264
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	174, 237
Tru9I	TTAA	2 cut(s)	174, 237
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	349
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.