Rh2DG488600

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008898
Physical Location & Seq
Forward (+)
70659962 .. 70667177
7216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG488600.1

Sequence Viewer

Length: 477 bp
ATGAAGAAGAAAGCTCTGGAATTAATGGAACCAGTTAATGTGTATGTTCCTAAAGATAGAGTTATGAACCTCCATCAAGGATACAGATTCGTGGAGTTCCGAAGTGAAGAGGATGCTAATTACATAAGTTTTCCTATTCTCAAGTTATTATATAGCTCCCCGATTCCTGTTAAAGATGTTGTTTCTGACAATAAATTTGTTGTTTTGACTGCCATGCCTGCAATCAAGGTGCTTAATATGATCAAGCTTTACGGAAAGGCAATTCGTGTAAATAAGCTTCCCAAGATAAAAAGGAAACTTCTCTACGATATTTTCAGTGCATTTGGAGTCATAGTTACAAACCCAAAGATAATGAGAGAACCTGAAACTGGAAACTCCCGTGGATTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCTGATGCAGCTATTGAGCTGAAAAAGTGCAATTATATGGATGAATTAAGTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

158

Amino Acids

18.05

Weight (kDa)

9.32

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 95 - 146 2.3e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 368
AluBI AGCT 7 cut(s) 14, 156, 247, 277, 399, 428, 436
AluI AGCT 7 cut(s) 14, 156, 247, 277, 399, 428, 436
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AseI ATTAAT 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 81
BciVI GTATCC 1 cut(s) 74
BclI TGATCA 1 cut(s) 240
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 3 cut(s) 103, 412, 425
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 32, 373
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 2 cut(s) 118, 463
BseLI CCNNNNNNNGG 1 cut(s) 368
BseNI ACTGG 2 cut(s) 32, 373
BseXI GCAGC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 368
Bsp143I GATC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 30
BsrI ACTGG 2 cut(s) 32, 373
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 118, 463
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 2 cut(s) 218, 422
BstV1I GCAGC 1 cut(s) 437
BsuI GTATCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 2 cut(s) 118, 463
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 219
CviAII CATG 1 cut(s) 214
CviJI RGCY 7 cut(s) 14, 156, 247, 277, 399, 428, 436
CviKI_1 RGCY 7 cut(s) 14, 156, 247, 277, 399, 428, 436
DdeI CTNAG 1 cut(s) 474
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
FaeI CATG 1 cut(s) 217
FalI AAGNNNNNCTT 1 cut(s) 457
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 2 cut(s) 125, 470
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
Hin1II CATG 1 cut(s) 217
HindIII AAGCTT 2 cut(s) 245, 275
HinfI GANTC 4 cut(s) 87, 163, 327, 404
Hpy188I TCNGA 3 cut(s) 101, 187, 421
Hpy188III TCNNGA 1 cut(s) 17
HpyCH4V TGCA 5 cut(s) 221, 320, 425, 447, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 422
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 6 cut(s) 2, 45, 180, 231, 354, 375
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 3 cut(s) 103, 412, 425
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 3 cut(s) 16, 19, 119
MluCI AATT 6 cut(s) 20, 118, 194, 261, 448, 461
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 80, 103, 406
MseI TTAA 5 cut(s) 23, 36, 171, 234, 464
MwoI GCNNNNNNNGC 2 cut(s) 218, 422
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 87, 163, 404
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PshBI ATTAAT 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 30
SaqAI TTAA 5 cut(s) 23, 36, 171, 234, 464
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 1 cut(s) 336
SfaNI GCATC 3 cut(s) 103, 412, 425
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 6 cut(s) 20, 118, 194, 261, 448, 461
TasI AATT 6 cut(s) 20, 118, 194, 261, 448, 461
TfiI GAWTC 3 cut(s) 87, 163, 404
Tru1I TTAA 5 cut(s) 23, 36, 171, 234, 464
Tru9I TTAA 5 cut(s) 23, 36, 171, 234, 464
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 17, 80, 382, 474
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 322
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.